{ "type": "genome", "identifier": "GCA_902805845.1", "organism": "uncultured Nocardioidaceae bacterium", "title": "uncultured Nocardioidaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "UNIVERSITY OF VIENNA", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902805845.1", "bioproject": "PRJEB36534", "biosample": "SAMEA6526616", "wgs_master": "CADCUI000000000.1", "refseq_category": "na", "taxid": "253824", "species_taxid": "253824", "organism_name": "uncultured Nocardioidaceae bacterium", "infraspecific_name": "", "isolate": "AVDCRST_MAG34", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/30", "asm_name": "AVDCRST-MAG34", "submitter": "UNIVERSITY OF VIENNA", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/805/845/GCA_902805845.1_AVDCRST-MAG34", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-30", "dateModified": "2020-06-30", "datePublished": "2020-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Nocardioidaceae bacterium" ], "sample_taxid": [ "253824" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Israel" ], "sample_host_location_id": [], "data_size": "0.884 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 84.47, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3279375", "Number of Sequences": "91", "Longest Sequences (bp)": "209349", "N50 (bp)": "49371", "Gap Ratio (%)": "0.001220", "GCcontent (%)": "71.3", "Number of CDSs": "3056", "Average Protein Length": "319.6", "Coding Ratio (%)": "89.4", "Number of rRNAs": "1", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides iriomotensis", "strain": "strain=NBRC 105384", "accession": "GCA_004168035.1", "taxid": 715784, "species_taxid": 715784, "relation_to_type": "type", "validated": true, "ani": 79.5851, "matched_fragments": 522, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides donggukensis", "strain": "strain=MJB4", "accession": "GCA_014842875.1", "taxid": 2774019, "species_taxid": 2774019, "relation_to_type": "type", "validated": true, "ani": 79.3326, "matched_fragments": 425, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panacis", "strain": "strain=G188", "accession": "GCA_019039255.1", "taxid": 2849501, "species_taxid": 2849501, "relation_to_type": "type", "validated": true, "ani": 79.3079, "matched_fragments": 527, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides deserti", "strain": "strain=CGMCC 4.7183", "accession": "GCA_014646035.1", "taxid": 1588644, "species_taxid": 1588644, "relation_to_type": "type", "validated": true, "ani": 79.0985, "matched_fragments": 453, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ginsengisegetis", "strain": "strain=DSM 21349", "accession": "GCA_014138045.1", "taxid": 661491, "species_taxid": 661491, "relation_to_type": "type", "validated": true, "ani": 79.0952, "matched_fragments": 460, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides guangzhouensis", "strain": "strain=130", "accession": "GCA_004519545.1", "taxid": 2497878, "species_taxid": 2497878, "relation_to_type": "type", "validated": true, "ani": 79.0866, "matched_fragments": 483, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ungokensis", "strain": "strain=LMG 28591", "accession": "GCA_013466985.1", "taxid": 1643322, "species_taxid": 1643322, "relation_to_type": "type", "validated": true, "ani": 79.0755, "matched_fragments": 464, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides deserti", "strain": "strain=SC8A-24", "accession": "GCA_014266025.1", "taxid": 1588644, "species_taxid": 1588644, "relation_to_type": "type", "validated": true, "ani": 79.0473, "matched_fragments": 454, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides halotolerans", "strain": "strain=DSM 19273", "accession": "GCA_000422805.1", "taxid": 433660, "species_taxid": 433660, "relation_to_type": "type", "validated": true, "ani": 79.0277, "matched_fragments": 457, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides massiliensis", "strain": "strain=GD13", "accession": "GCA_900067705.2", "taxid": 1325935, "species_taxid": 1325935, "relation_to_type": "type", "validated": true, "ani": 78.9379, "matched_fragments": 323, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides allogilvus", "strain": "strain=KCTC 49020", "accession": "GCA_003047285.1", "taxid": 2072017, "species_taxid": 2072017, "relation_to_type": "type", "validated": true, "ani": 78.937, "matched_fragments": 368, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides rotundus", "strain": "strain=MCCC 1A10561", "accession": "GCA_019931675.1", "taxid": 1774216, "species_taxid": 1774216, "relation_to_type": "type", "validated": true, "ani": 78.9299, "matched_fragments": 389, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides flavescens", "strain": "strain=YIM 123512", "accession": "GCA_009823805.1", "taxid": 2691959, "species_taxid": 2691959, "relation_to_type": "type", "validated": true, "ani": 78.89, "matched_fragments": 458, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides coralli", "strain": "strain=SCSIO 67246", "accession": "GCA_019880385.1", "taxid": 2872154, "species_taxid": 2872154, "relation_to_type": "type", "validated": true, "ani": 78.8795, "matched_fragments": 410, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides marinisabuli", "strain": "strain=DSM 18965", "accession": "GCA_013409965.1", "taxid": 419476, "species_taxid": 419476, "relation_to_type": "type", "validated": true, "ani": 78.8786, "matched_fragments": 451, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides marinisabuli", "strain": "strain=DSM 18965", "accession": "GCA_013466785.1", "taxid": 419476, "species_taxid": 419476, "relation_to_type": "type", "validated": true, "ani": 78.871, "matched_fragments": 457, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides soli", "strain": "strain=DSM 105498", "accession": "GCA_014191495.1", "taxid": 1036020, "species_taxid": 1036020, "relation_to_type": "type", "validated": true, "ani": 78.8524, "matched_fragments": 461, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides islandensis", "strain": "strain=KCTC 19275", "accession": "GCA_015352455.1", "taxid": 433663, "species_taxid": 433663, "relation_to_type": "type", "validated": true, "ani": 78.8067, "matched_fragments": 443, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides okcheonensis", "strain": "strain=MMS20-HV4-12", "accession": "GCA_020991065.1", "taxid": 2894081, "species_taxid": 2894081, "relation_to_type": "type", "validated": true, "ani": 78.6887, "matched_fragments": 448, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides rubriscoriae", "strain": "strain=DSM 23986", "accession": "GCA_008087085.1", "taxid": 642762, "species_taxid": 642762, "relation_to_type": "type", "validated": true, "ani": 78.657, "matched_fragments": 437, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides plantarum", "strain": "strain=DSM 11054", "accession": "GCA_006346395.1", "taxid": 29299, "species_taxid": 29299, "relation_to_type": "type", "validated": true, "ani": 78.6132, "matched_fragments": 415, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides litoris", "strain": "strain=DSM 103718", "accession": "GCA_006346315.1", "taxid": 1926648, "species_taxid": 1926648, "relation_to_type": "type", "validated": true, "ani": 78.6085, "matched_fragments": 435, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides hwasunensis", "strain": "strain=19197", "accession": "GCA_014779665.1", "taxid": 397258, "species_taxid": 397258, "relation_to_type": "type", "validated": true, "ani": 78.5631, "matched_fragments": 452, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lianchengensis", "strain": "strain=CGMCC 4.6858", "accession": "GCA_013409225.1", "taxid": 1045774, "species_taxid": 1045774, "relation_to_type": "type", "validated": true, "ani": 78.5145, "matched_fragments": 465, "total_fragments": 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"below_threshold" }, { "organism_name": "Nocardioides gilvus", "strain": "strain=XZ17", "accession": "GCA_003194605.1", "taxid": 1735589, "species_taxid": 1735589, "relation_to_type": "type", "validated": true, "ani": 77.9508, "matched_fragments": 259, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mumia flava", "strain": "strain=DSM 27763", "accession": "GCA_002797495.1", "taxid": 1348852, "species_taxid": 1348852, "relation_to_type": "type", "validated": true, "ani": 77.6299, "matched_fragments": 318, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces chumphonensis", "strain": "strain=KK1-2", "accession": "GCA_014779715.1", "taxid": 1214925, "species_taxid": 1214925, "relation_to_type": "type", "validated": true, "ani": 76.5976, "matched_fragments": 269, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 84.47, 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