{
    "type": "genome",
    "identifier": "GCA_902835295.1",
    "organism": "Coriobacteriaceae bacterium",
    "title": "Coriobacteriaceae bacterium",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902835295.1",
        "bioproject": "PRJEB37358",
        "biosample": "SAMEA6784166",
        "wgs_master": "CADFMI000000000.1",
        "refseq_category": "na",
        "taxid": "2011094",
        "species_taxid": "2011094",
        "organism_name": "Coriobacteriaceae bacterium",
        "infraspecific_name": "",
        "isolate": "MGYG-HGUT-04777",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/02/03",
        "asm_name": "MGYG-HGUT-04777",
        "submitter": "EMG",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/835/295/GCA_902835295.1_MGYG-HGUT-04777",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-02-03",
    "dateModified": "2021-02-03",
    "datePublished": "2021-02-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Coriobacteriaceae bacterium"
        ],
        "sample_taxid": [
            "2011094"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.408 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 58.18,
        "contamination": 7.97,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1378027",
        "Number of Sequences": "634",
        "Longest Sequences (bp)": "11535",
        "N50 (bp)": "2376",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "59.7",
        "Number of CDSs": "785",
        "Average Protein Length": "253.6",
        "Coding Ratio (%)": "43.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "19",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Collinsella aerofaciens",
                "strain": "strain=NCTC11838",
                "accession": "GCA_900461335.1",
                "taxid": 74426,
                "species_taxid": 74426,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.8952,
                "matched_fragments": 107,
                "total_fragments": 123,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Collinsella aerofaciens",
                "strain": "strain=JCM 10188",
                "accession": "GCA_010509075.1",
                "taxid": 74426,
                "species_taxid": 74426,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.8256,
                "matched_fragments": 107,
                "total_fragments": 123,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Collinsella aerofaciens",
                "strain": "strain=ATCC 25986",
                "accession": "GCA_000169035.1",
                "taxid": 74426,
                "species_taxid": 74426,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.7873,
                "matched_fragments": 109,
                "total_fragments": 123,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 58.18,
            "contamination": 7.97,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_905215065.1",
                "gtdb_species": "s__Collinsella sp905215065",
                "ani": 94.8929,
                "matched_fragments": 111,
                "total_fragments": 123,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.1686,
                "mean_intra_species_ani": "95.36",
                "min_intra_species_ani": "95.20",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCA_902835305.1",
                "gtdb_species": "s__Collinsella sp902835305",
                "ani": 94.7046,
                "matched_fragments": 108,
                "total_fragments": 123,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.56",
                "min_intra_species_ani": "95.13",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900541645.1",
                "gtdb_species": "s__Collinsella sp900541645",
                "ani": 94.5107,
                "matched_fragments": 105,
                "total_fragments": 123,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.32",
                "min_intra_species_ani": "95.32",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003469205.1",
                "gtdb_species": "s__Collinsella sp003469205",
                "ani": 94.4293,
                "matched_fragments": 113,
                "total_fragments": 123,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.74",
                "min_intra_species_ani": "95.06",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 17,
                "status": "-"
            },
            {
                "accession": "GCF_003458415.1",
                "gtdb_species": "s__Collinsella sp003458415",
                "ani": 94.3233,
                "matched_fragments": 112,
                "total_fragments": 123,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.71",
                "min_intra_species_ani": "95.33",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_905197665.1",
                "gtdb_species": "s__Collinsella sp900556445",
                "ani": 94.3091,
                "matched_fragments": 106,
                "total_fragments": 123,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.037,
                "mean_intra_species_ani": "96.72",
                "min_intra_species_ani": "95.07",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_905214525.1",
                "gtdb_species": "s__Collinsella sp905214525",
                "ani": 94.1892,
                "matched_fragments": 113,
                "total_fragments": 123,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.3232,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900762345.1",
                "gtdb_species": "s__Collinsella sp900762345",
                "ani": 94.1487,
                "matched_fragments": 100,
                "total_fragments": 123,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902405995.1",
                "gtdb_species": "s__Collinsella sp902405995",
                "ani": 93.6865,
                "matched_fragments": 110,
                "total_fragments": 123,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.1886,
                "mean_intra_species_ani": "96.57",
                "min_intra_species_ani": "95.30",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_900768435.1",
                "gtdb_species": "s__Collinsella sp900768435",
                "ani": 93.129,
                "matched_fragments": 100,
                "total_fragments": 123,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018381235.1",
                "gtdb_species": "s__Collinsella sp018381235",
                "ani": 93.0934,
                "matched_fragments": 113,
                "total_fragments": 123,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.0673,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900755685.1",
                "gtdb_species": "s__Collinsella sp900755685",
                "ani": 93.0111,
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                "total_fragments": 123,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.1616,
                "mean_intra_species_ani": "97.58",
                "min_intra_species_ani": "95.18",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
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            },
            {
                "accession": "GCA_900545055.1",
                "gtdb_species": "s__Collinsella sp900545055",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900550355.1",
                "gtdb_species": "s__Collinsella sp900550355",
                "ani": 92.4237,
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                "total_fragments": 123,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.039,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900542155.1",
                "gtdb_species": "s__Collinsella sp900542155",
                "ani": 92.2501,
                "matched_fragments": 108,
                "total_fragments": 123,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.435,
        "cell_length": 0.089,
        "doubling_h": null,
        "growth_tmp": 36.125,
        "optimum_tmp": 36.142,
        "optimum_ph": 7.233,
        "genome_size": 2293139.966,
        "gc_content": 61.955,
        "coding_genes": 1736.778,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 50.333,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
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        "p__Actinomycetota",
        "c__Coriobacteriia",
        "o__Coriobacteriales",
        "f__Coriobacteriaceae",
        "g__Collinsella",
        "s__Collinsella sp003465485"
    ],
    "_genome_taxon": [
        "Coriobacteriaceae",
        "bacterium",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Coriobacteriia",
        "o__Coriobacteriales",
        "f__Coriobacteriaceae",
        "g__Collinsella",
        "s__Collinsella sp003465485",
        "Bacteria",
        "Actinomycetota",
        "Coriobacteriia",
        "Coriobacteriales",
        "Coriobacteriaceae",
        "Collinsella",
        "Collinsella",
        "sp003465485"
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}