{ "type": "genome", "identifier": "GCA_902836095.1", "organism": "Streptococcaceae bacterium", "title": "Streptococcaceae bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902836095.1", "bioproject": "PRJEB37358", "biosample": "SAMEA6784256", "wgs_master": "CADFPG000000000.1", "refseq_category": "na", "taxid": "2291322", "species_taxid": "2291322", "organism_name": "Streptococcaceae bacterium", "infraspecific_name": "", "isolate": "MGYG-HGUT-04862", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/03", "asm_name": "MGYG-HGUT-04862", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/836/095/GCA_902836095.1_MGYG-HGUT-04862", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-03", "dateModified": "2021-02-03", "datePublished": "2021-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcaceae bacterium" ], "sample_taxid": [ "2291322" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.305 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 34.26, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1033539", "Number of Sequences": "357", "Longest Sequences (bp)": "11161", "N50 (bp)": "3014", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.1", "Number of CDSs": "702", "Average Protein Length": "258.0", "Coding Ratio (%)": "52.6", "Number of rRNAs": "0", "Number of tRNAs": "3", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus halitosis", "strain": "strain=VT-4", "accession": "GCA_003143695.2", "taxid": 2172545, "species_taxid": 2172545, "relation_to_type": "type", "validated": true, "ani": 94.2165, "matched_fragments": 125, "total_fragments": 136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus oralis", "strain": "strain=ATCC 35037", "accession": "GCA_000164095.1", "taxid": 1303, "species_taxid": 1303, "relation_to_type": "type", "validated": true, "ani": 92.5642, "matched_fragments": 125, "total_fragments": 136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus oralis", "strain": "strain=CCUG 24891", "accession": "GCA_001639375.1", "taxid": 1303, "species_taxid": 1303, "relation_to_type": "type", "validated": true, "ani": 92.5437, "matched_fragments": 124, "total_fragments": 136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus oralis", "strain": "strain=CCUG 13229", "accession": "GCA_002014885.1", "taxid": 1303, "species_taxid": 1303, "relation_to_type": "type", "validated": true, "ani": 92.5393, "matched_fragments": 126, "total_fragments": 136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus oralis", "strain": "strain=ATCC 35037", "accession": "GCA_000148565.2", "taxid": 1303, "species_taxid": 1303, "relation_to_type": "type", "validated": true, "ani": 92.5359, "matched_fragments": 125, "total_fragments": 136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus downii", "strain": "strain=CECT 9732", "accession": "GCA_004353325.1", "taxid": 1968889, "species_taxid": 1968889, "relation_to_type": "type", "validated": true, "ani": 91.4926, "matched_fragments": 126, "total_fragments": 136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus mitis", "strain": "strain=NCTC12261", "accession": "GCA_900459425.1", "taxid": 28037, "species_taxid": 28037, "relation_to_type": "suspected-type", "validated": true, "ani": 90.568, "matched_fragments": 110, "total_fragments": 136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus mitis", "strain": "strain=NCTC 12261", "accession": "GCA_000148585.3", "taxid": 28037, "species_taxid": 28037, "relation_to_type": "suspected-type", "validated": true, "ani": 90.5341, "matched_fragments": 109, "total_fragments": 136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus mitis", "strain": "strain=FDAARGOS 1456", "accession": "GCA_019047825.1", "taxid": 28037, "species_taxid": 28037, "relation_to_type": "suspected-type", "validated": true, "ani": 90.4913, "matched_fragments": 110, "total_fragments": 136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus mitis", "strain": "strain=CCUG 31611", "accession": "GCA_002014755.1", "taxid": 28037, "species_taxid": 28037, "relation_to_type": "suspected-type", "validated": true, "ani": 90.4339, "matched_fragments": 112, "total_fragments": 136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus toyakuensis", "strain": "strain=TP1632", "accession": "GCA_024346585.1", "taxid": 2819619, "species_taxid": 2819619, "relation_to_type": "type", "validated": true, "ani": 90.3613, "matched_fragments": 109, "total_fragments": 136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus gwangjuense", "strain": "strain=ChDC B345", "accession": "GCA_003627155.1", "taxid": 1433513, "species_taxid": 1433513, "relation_to_type": "type", "validated": true, "ani": 90.1866, "matched_fragments": 121, "total_fragments": 136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus symci", "strain": "strain=C17", "accession": "GCA_006385165.1", "taxid": 2588991, "species_taxid": 2588991, "relation_to_type": "type", "validated": true, "ani": 90.0496, "matched_fragments": 116, "total_fragments": 136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vulneris", "strain": "strain=DM3B3", "accession": "GCA_019218685.1", "taxid": 2853160, "species_taxid": 2853160, "relation_to_type": "type", "validated": true, "ani": 89.8064, "matched_fragments": 121, "total_fragments": 136, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 34.26, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_003143695.2", "gtdb_species": "s__Streptococcus halitosis", "ani": 94.2165, "matched_fragments": 125, "total_fragments": 136, "gtdb_taxonomy": 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