{ "type": "genome", "identifier": "GCA_902836245.1", "organism": "Atopobiaceae bacterium", "title": "Atopobiaceae bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902836245.1", "bioproject": "PRJEB37358", "biosample": "SAMEA6784332", "wgs_master": "CADFPZ000000000.1", "refseq_category": "na", "taxid": "2485926", "species_taxid": "2485926", "organism_name": "Atopobiaceae bacterium", "infraspecific_name": "", "isolate": "MGYG-HGUT-04934", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/03", "asm_name": "MGYG-HGUT-04934", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/836/245/GCA_902836245.1_MGYG-HGUT-04934", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-03", "dateModified": "2021-02-03", "datePublished": "2021-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Atopobiaceae bacterium" ], "sample_taxid": [ "2485926" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Denmark" ], "sample_host_location_id": [], "data_size": "0.342 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 51.69, "contamination": 13.4, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1160801", "Number of Sequences": "547", "Longest Sequences (bp)": "17308", "N50 (bp)": "2203", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.3", "Number of CDSs": "665", "Average Protein Length": "235.2", "Coding Ratio (%)": "40.4", "Number of rRNAs": "0", "Number of tRNAs": "33", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thermophilibacter provencensis", "strain": "strain=Marseille-P2912", "accession": "GCA_900128445.1", "taxid": 1852386, "species_taxid": 1852386, "relation_to_type": "type", "validated": true, "ani": 82.5792, "matched_fragments": 53, "total_fragments": 109, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 51.69, "contamination": 13.4, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002159735.1", "gtdb_species": "s__Thermophilibacter sp002159735", "ani": 83.0406, "matched_fragments": 57, "total_fragments": 109, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Thermophilibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014982725.1", "gtdb_species": "s__Thermophilibacter sp014982725", "ani": 82.6686, "matched_fragments": 51, "total_fragments": 109, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Thermophilibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002159535.1", "gtdb_species": "s__Thermophilibacter sp002159535", "ani": 82.511, "matched_fragments": 57, "total_fragments": 109, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Thermophilibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019117265.1", "gtdb_species": "s__Thermophilibacter pullicola", "ani": 82.4777, "matched_fragments": 58, "total_fragments": 109, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Thermophilibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002159495.1", "gtdb_species": "s__Thermophilibacter sp002159495", "ani": 82.2038, "matched_fragments": 54, "total_fragments": 109, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Thermophilibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002160255.1", "gtdb_species": "s__Thermophilibacter avistercoris", "ani": 81.937, "matched_fragments": 51, "total_fragments": 109, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Thermophilibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.79", "min_intra_species_ani": "97.22", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 5, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.373, "cell_length": -0.255, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 37.444, "optimum_ph": 6.5, "genome_size": 1899076.515, "gc_content": 49.449, "coding_genes": 1538.167, "rRNA16S_genes": 1.0, "tRNA_genes": 47.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.833, "coccus_cell_shape": 0.166, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Coriobacteriia", "o__Coriobacteriales", "f__Atopobiaceae", "g__Thermophilibacter", "s__Thermophilibacter sp949291295" ], "_genome_taxon": [ "Atopobiaceae", "bacterium", "d__Bacteria", "p__Actinomycetota", "c__Coriobacteriia", "o__Coriobacteriales", "f__Atopobiaceae", "g__Thermophilibacter", "s__Thermophilibacter sp949291295", "Bacteria", "Actinomycetota", "Coriobacteriia", "Coriobacteriales", "Atopobiaceae", "Thermophilibacter", "Thermophilibacter", "sp949291295" ], "quality": 1, "quality_label": "\u2b50\ufe0f" }