{ "type": "genome", "identifier": "GCA_902836295.1", "organism": "Atopobiaceae bacterium", "title": "Atopobiaceae bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902836295.1", "bioproject": "PRJEB37358", "biosample": "SAMEA6784374", "wgs_master": "CADFQB000000000.1", "refseq_category": "na", "taxid": "2485926", "species_taxid": "2485926", "organism_name": "Atopobiaceae bacterium", "infraspecific_name": "", "isolate": "MGYG-HGUT-04975", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/03", "asm_name": "MGYG-HGUT-04975", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/836/295/GCA_902836295.1_MGYG-HGUT-04975", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-03", "dateModified": "2021-02-03", "datePublished": "2021-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Atopobiaceae bacterium" ], "sample_taxid": [ "2485926" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain" ], "sample_host_location_id": [], "data_size": "0.308 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 32.74, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1093082", "Number of Sequences": "379", "Longest Sequences (bp)": "12374", "N50 (bp)": "3199", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.8", "Number of CDSs": "695", "Average Protein Length": "273.6", "Coding Ratio (%)": "52.2", "Number of rRNAs": "0", "Number of tRNAs": "21", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thermophilibacter provencensis", "strain": "strain=Marseille-P2912", "accession": "GCA_900128445.1", "taxid": 1852386, "species_taxid": 1852386, "relation_to_type": "type", "validated": true, "ani": 84.8856, "matched_fragments": 124, "total_fragments": 148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermophilibacter mediterraneus", "strain": "strain=Marseille-P3256", "accession": "GCA_900119385.1", "taxid": 1871031, "species_taxid": 1871031, "relation_to_type": "type", "validated": true, "ani": 84.5338, "matched_fragments": 115, "total_fragments": 148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermophilibacter immobilis", "strain": "strain=LZLJ-2", "accession": "GCA_015277515.1", "taxid": 2779519, "species_taxid": 2779519, "relation_to_type": "type", "validated": true, "ani": 81.1887, "matched_fragments": 91, "total_fragments": 148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella intestinalis", "strain": "strain=KCTC 25379", "accession": "GCA_023276655.1", "taxid": 2930083, "species_taxid": 2930083, "relation_to_type": "type", "validated": true, "ani": 80.2735, "matched_fragments": 73, "total_fragments": 148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella uli", "strain": "strain=DSM 7084", "accession": "GCA_000143845.1", "taxid": 133926, "species_taxid": 133926, "relation_to_type": "suspected-type", "validated": true, "ani": 79.7375, "matched_fragments": 52, "total_fragments": 148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella uli", "strain": "strain=DSM 7084", "accession": "GCA_001437585.1", "taxid": 133926, "species_taxid": 133926, "relation_to_type": "suspected-type", "validated": true, "ani": 79.6845, "matched_fragments": 52, "total_fragments": 148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enorma burkinafasonensis", "strain": "strain=Marseille-P9525", "accession": "GCA_902150035.1", "taxid": 2590867, "species_taxid": 2590867, "relation_to_type": "type", "validated": true, "ani": 79.6382, "matched_fragments": 68, "total_fragments": 148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enorma timonensis", "strain": "strain=GD5", "accession": "GCA_000321165.1", "taxid": 1232436, "species_taxid": 1232436, "relation_to_type": "type", "validated": true, "ani": 79.4629, "matched_fragments": 60, "total_fragments": 148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella massiliensis", "strain": "strain=SIT9", "accession": "GCA_001457795.1", "taxid": 1622075, "species_taxid": 1622075, "relation_to_type": "type", 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