{
    "type": "genome",
    "identifier": "GCA_902837285.1",
    "organism": "Streptococcaceae bacterium",
    "title": "Streptococcaceae bacterium",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902837285.1",
        "bioproject": "PRJEB37358",
        "biosample": "SAMEA6784357",
        "wgs_master": "CADFTU000000000.1",
        "refseq_category": "na",
        "taxid": "2291322",
        "species_taxid": "2291322",
        "organism_name": "Streptococcaceae bacterium",
        "infraspecific_name": "",
        "isolate": "MGYG-HGUT-04958",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/02/03",
        "asm_name": "MGYG-HGUT-04958",
        "submitter": "EMG",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/837/285/GCA_902837285.1_MGYG-HGUT-04958",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-02-03",
    "dateModified": "2021-02-03",
    "datePublished": "2021-02-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptococcaceae bacterium"
        ],
        "sample_taxid": [
            "2291322"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Spain"
        ],
        "sample_host_location_id": [],
        "data_size": "0.349 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 70.83,
        "contamination": 2.55,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1169872",
        "Number of Sequences": "582",
        "Longest Sequences (bp)": "9083",
        "N50 (bp)": "2139",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "39.9",
        "Number of CDSs": "870",
        "Average Protein Length": "208.2",
        "Coding Ratio (%)": "46.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "10",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Streptococcus salivarius",
                "strain": "strain=NCTC8618",
                "accession": "GCA_900636435.1",
                "taxid": 1304,
                "species_taxid": 1304,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 94.9574,
                "matched_fragments": 90,
                "total_fragments": 92,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus salivarius",
                "strain": "strain=ATCC 7073",
                "accession": "GCA_900143035.1",
                "taxid": 1304,
                "species_taxid": 1304,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 94.8669,
                "matched_fragments": 91,
                "total_fragments": 92,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus salivarius",
                "strain": "strain=NCTC 8618",
                "accession": "GCA_000785515.1",
                "taxid": 1304,
                "species_taxid": 1304,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 94.8521,
                "matched_fragments": 91,
                "total_fragments": 92,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus salivarius",
                "strain": "strain=JCM 5707",
                "accession": "GCA_019972895.1",
                "taxid": 1304,
                "species_taxid": 1304,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 94.7818,
                "matched_fragments": 91,
                "total_fragments": 92,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus thermophilus",
                "strain": "strain=ATCC 19258",
                "accession": "GCA_010120595.1",
                "taxid": 1308,
                "species_taxid": 1308,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.6382,
                "matched_fragments": 88,
                "total_fragments": 92,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus thermophilus",
                "strain": "strain=ATCC 19258",
                "accession": "GCA_004354505.1",
                "taxid": 1308,
                "species_taxid": 1308,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.4253,
                "matched_fragments": 89,
                "total_fragments": 92,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus thermophilus",
                "strain": "strain=DSM 20617",
                "accession": "GCA_019972875.1",
                "taxid": 1308,
                "species_taxid": 1308,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.3488,
                "matched_fragments": 88,
                "total_fragments": 92,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus vestibularis",
                "strain": "strain=ATCC 49124",
                "accession": "GCA_000188295.1",
                "taxid": 1343,
                "species_taxid": 1343,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.9644,
                "matched_fragments": 88,
                "total_fragments": 92,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 70.83,
            "contamination": 2.55,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_009738225.1",
                "gtdb_species": "s__Streptococcus sp001556435",
                "ani": 95.571,
                "matched_fragments": 91,
                "total_fragments": 92,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.11",
                "min_intra_species_ani": "95.45",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 79,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000785515.1",
                "gtdb_species": "s__Streptococcus salivarius",
                "ani": 94.8521,
                "matched_fragments": 91,
                "total_fragments": 92,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.08",
                "min_intra_species_ani": "95.32",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 131,
                "status": "-"
            },
            {
                "accession": "GCF_010120595.1",
                "gtdb_species": "s__Streptococcus thermophilus",
                "ani": 93.6382,
                "matched_fragments": 88,
                "total_fragments": 92,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.46",
                "min_intra_species_ani": "97.47",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 130,
                "status": "-"
            },
            {
                "accession": "GCA_003521145.1",
                "gtdb_species": "s__Streptococcus sp003521145",
                "ani": 93.2343,
                "matched_fragments": 73,
                "total_fragments": 92,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000188295.1",
                "gtdb_species": "s__Streptococcus vestibularis",
                "ani": 92.9644,
                "matched_fragments": 88,
                "total_fragments": 92,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.03",
                "min_intra_species_ani": "95.83",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 14,
                "status": "-"
            },
            {
                "accession": "GCF_010604095.1",
                "gtdb_species": "s__Streptococcus sp000187445",
                "ani": 90.5795,
                "matched_fragments": 89,
                "total_fragments": 92,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.94",
                "min_intra_species_ani": "96.18",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 19,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.157,
        "cell_length": -0.166,
        "doubling_h": -0.187,
        "growth_tmp": 36.129,
        "optimum_tmp": 35.805,
        "optimum_ph": 6.657,
        "genome_size": 2105147.665,
        "gc_content": 39.138,
        "coding_genes": 1966.735,
        "rRNA16S_genes": 4.786,
        "tRNA_genes": 61.771,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.25,
        "facultative_respiration": 0.373,
        "anaerobic_respiration": 0.131,
        "aerobic_respiration": 0.494,
        "mesophilic_range_tmp": 0.972,
        "thermophilic_range_tmp": 0.027,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.935,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.064,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Streptococcaceae",
        "g__Streptococcus",
        "s__Streptococcus sp001556435"
    ],
    "_genome_taxon": [
        "Streptococcaceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Streptococcaceae",
        "g__Streptococcus",
        "s__Streptococcus sp001556435",
        "Bacteria",
        "Bacillota",
        "Bacilli",
        "Lactobacillales",
        "Streptococcaceae",
        "Streptococcus",
        "Streptococcus",
        "sp001556435"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}