{
    "type": "genome",
    "identifier": "GCA_902837375.1",
    "organism": "Oscillospiraceae bacterium",
    "title": "Oscillospiraceae bacterium",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902837375.1",
        "bioproject": "PRJEB37358",
        "biosample": "SAMEA6784372",
        "wgs_master": "CADFUJ000000000.1",
        "refseq_category": "na",
        "taxid": "2485925",
        "species_taxid": "2485925",
        "organism_name": "Oscillospiraceae bacterium",
        "infraspecific_name": "",
        "isolate": "MGYG-HGUT-04973",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/02/03",
        "asm_name": "MGYG-HGUT-04973",
        "submitter": "EMG",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/837/375/GCA_902837375.1_MGYG-HGUT-04973",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-02-03",
    "dateModified": "2021-02-03",
    "datePublished": "2021-02-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Oscillospiraceae bacterium"
        ],
        "sample_taxid": [
            "2485925"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Spain"
        ],
        "sample_host_location_id": [],
        "data_size": "0.388 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 41.72,
        "contamination": 9.26,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1331462",
        "Number of Sequences": "562",
        "Longest Sequences (bp)": "6992",
        "N50 (bp)": "2424",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "60.7",
        "Number of CDSs": "794",
        "Average Protein Length": "268.9",
        "Coding Ratio (%)": "48.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "15",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Faecalibacterium duncaniae",
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                "accession": "GCA_010509575.1",
                "taxid": 411483,
                "species_taxid": 411483,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 91,
                "total_fragments": 101,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium duncaniae",
                "strain": "strain=A2-165",
                "accession": "GCA_000162015.1",
                "taxid": 411483,
                "species_taxid": 411483,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.3389,
                "matched_fragments": 92,
                "total_fragments": 101,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium prausnitzii",
                "strain": "strain=ATCC 27768",
                "accession": "GCA_003324185.1",
                "taxid": 853,
                "species_taxid": 853,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 86.3026,
                "matched_fragments": 95,
                "total_fragments": 101,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium hattorii",
                "strain": "strain=APC922/41-1",
                "accession": "GCA_003287455.1",
                "taxid": 2935520,
                "species_taxid": 2935520,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.8435,
                "matched_fragments": 88,
                "total_fragments": 101,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium gallinarum",
                "strain": "strain=JCM 17207",
                "accession": "GCA_022180365.1",
                "taxid": 2903556,
                "species_taxid": 2903556,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0553,
                "matched_fragments": 69,
                "total_fragments": 101,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 9.26,
            "strain_heterogeneity": 100.0
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        "gtdb_result": [
            {
                "accession": "GCF_003293635.1",
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                "total_fragments": 101,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.11",
                "min_intra_species_ani": "95.97",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 34,
                "status": "-"
            },
            {
                "accession": "GCA_900758465.1",
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                "matched_fragments": 95,
                "total_fragments": 101,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.14",
                "min_intra_species_ani": "97.85",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_010509575.1",
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                "matched_fragments": 91,
                "total_fragments": 101,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.30",
                "min_intra_species_ani": "96.44",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.71",
                "num_clustered_genomes": 49,
                "status": "-"
            },
            {
                "accession": "GCF_002550015.1",
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                "matched_fragments": 90,
                "total_fragments": 101,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium",
                "ani_circumscription_radius": 95.0612,
                "mean_intra_species_ani": "96.42",
                "min_intra_species_ani": "95.34",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_003287405.1",
                "gtdb_species": "s__Faecalibacterium prausnitzii_J",
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                "matched_fragments": 93,
                "total_fragments": 101,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.32",
                "min_intra_species_ani": "96.98",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_003324185.1",
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                "mean_intra_species_ani": "96.64",
                "min_intra_species_ani": "96.12",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 47,
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            },
            {
                "accession": "GCA_002313795.1",
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                "matched_fragments": 88,
                "total_fragments": 101,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium",
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                "mean_intra_species_af": "0.73",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_003287495.1",
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            },
            {
                "accession": "GCA_900772565.1",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_905215595.1",
                "gtdb_species": "s__Faecalibacterium sp905215595",
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                "matched_fragments": 84,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_014858325.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.397,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 30.0,
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        "genome_size": 4470621.5,
        "gc_content": 49.895,
        "coding_genes": 4347.333,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 61.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    "_gtdb_taxon": [
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        "c__Clostridia",
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        "g__Faecalibacterium",
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    ],
    "_genome_taxon": [
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        "d__Bacteria",
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        "c__Clostridia",
        "o__Oscillospirales",
        "f__Ruminococcaceae",
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        "Bacillota",
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        "Clostridia",
        "Oscillospirales",
        "Ruminococcaceae",
        "Faecalibacterium",
        "s",
        "",
        ""
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}