{ "type": "genome", "identifier": "GCA_903822185.1", "organism": "uncultured Rhodospirillales bacterium", "title": "uncultured Rhodospirillales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903822185.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6955848", "wgs_master": "CAIJOA000000000.1", "refseq_category": "na", "taxid": "296830", "species_taxid": "296830", "organism_name": "uncultured Rhodospirillales bacterium", "infraspecific_name": "", "isolate": "Umea2_bin-0321", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/19", "asm_name": "freshwater MAG --- Umea2_bin-0321", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/822/185/GCA_903822185.1_freshwater_MAG_---_Umea2_bin-0321", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-19", "dateModified": "2020-07-19", "datePublished": "2020-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Rhodospirillales bacterium" ], "sample_taxid": [ "296830" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "1.189 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4266092", "Number of Sequences": "50", "Longest Sequences (bp)": "881717", "N50 (bp)": "195587", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.0", "Number of CDSs": "4161", "Average Protein Length": "310.8", "Coding Ratio (%)": "91.0", "Number of rRNAs": "1", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Oceanibaculum indicum", "strain": "strain=P24", "accession": "GCA_000299935.1", "taxid": 526216, "species_taxid": 526216, "relation_to_type": "type", "validated": true, "ani": 76.6552, "matched_fragments": 148, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanibaculum pacificum", "strain": "strain=MCCC 1A02656", "accession": "GCA_001618175.1", "taxid": 580166, "species_taxid": 580166, "relation_to_type": "type", "validated": true, "ani": 76.6027, "matched_fragments": 150, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hypericibacter adhaerens", "strain": "strain=R5959", "accession": "GCA_008728835.1", "taxid": 2602016, "species_taxid": 2602016, "relation_to_type": "type", "validated": true, "ani": 76.5957, "matched_fragments": 189, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanibaculum nanhaiense", "strain": "strain=L54-1-50", "accession": "GCA_002148795.1", "taxid": 1909734, "species_taxid": 1909734, "relation_to_type": "type", "validated": true, "ani": 76.466, "matched_fragments": 166, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum brasilense", "strain": "strain=Sp 7", "accession": "GCA_002027385.1", "taxid": 192, "species_taxid": 192, "relation_to_type": "type", "validated": true, "ani": 76.3344, "matched_fragments": 149, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum palustre", "strain": "strain=B2", "accession": "GCA_002573965.1", "taxid": 2044885, "species_taxid": 2044885, "relation_to_type": "type", "validated": true, "ani": 76.2915, "matched_fragments": 188, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum oryzae", "strain": "strain=COC8", "accession": "GCA_008364795.1", "taxid": 286727, "species_taxid": 286727, "relation_to_type": "type", "validated": true, "ani": 76.2831, "matched_fragments": 164, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum thiophilum", "strain": "strain=DSM 21654", "accession": "GCA_000960825.1", "taxid": 528244, "species_taxid": 528244, "relation_to_type": "type", "validated": true, "ani": 76.212, "matched_fragments": 182, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum moscoviense", "strain": "strain=BB-1", "accession": "GCA_001650635.1", "taxid": 1437059, "species_taxid": 1437059, "relation_to_type": "type", "validated": true, "ani": 76.1895, "matched_fragments": 140, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niveispirillum irakense", "strain": "strain=DSM 11586", "accession": "GCA_000429645.1", "taxid": 34011, "species_taxid": 34011, "relation_to_type": "type", "validated": true, "ani": 76.1766, "matched_fragments": 84, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum humicireducens", "strain": "strain=SgZ-5", "accession": "GCA_001639105.2", "taxid": 1226968, "species_taxid": 1226968, "relation_to_type": "type", "validated": true, "ani": 76.1529, "matched_fragments": 168, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nisaea nitritireducens", "strain": "strain=DSM 19540", "accession": "GCA_014904795.1", "taxid": 568392, "species_taxid": 568392, "relation_to_type": "type", "validated": true, "ani": 76.1518, "matched_fragments": 87, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella zoogloeoides", "strain": "strain=ATCC 19623", "accession": "GCA_020883495.1", "taxid": 352475, "species_taxid": 352475, "relation_to_type": "type", "validated": true, "ani": 76.14, "matched_fragments": 108, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum picis", "strain": "strain=IMMIB TAR-3", "accession": "GCA_017876115.1", "taxid": 488438, "species_taxid": 488438, "relation_to_type": "type", "validated": true, "ani": 76.1203, "matched_fragments": 178, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum ramasamyi", "strain": "strain=M2T2B2", "accession": "GCA_003233655.1", "taxid": 682998, "species_taxid": 682998, "relation_to_type": "type", "validated": true, "ani": 76.0852, "matched_fragments": 182, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nisaea sediminum", "strain": "strain=NBU1469", "accession": "GCA_014904705.1", "taxid": 2775867, "species_taxid": 2775867, "relation_to_type": "type", "validated": true, "ani": 76.0502, "matched_fragments": 134, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Skermanella mucosa", "strain": "strain=KEMB 2255-438", "accession": "GCA_016765655.2", "taxid": 1789672, "species_taxid": 1789672, "relation_to_type": "type", "validated": true, "ani": 76.0419, "matched_fragments": 148, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium diversitatis", "strain": "strain=CNPSo 4019", "accession": "GCA_016031635.1", "taxid": 2755406, "species_taxid": 2755406, "relation_to_type": "type", "validated": true, "ani": 76.0325, "matched_fragments": 167, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Skermanella aerolata", "strain": "strain=5416T-32", "accession": "GCA_000936425.1", "taxid": 393310, "species_taxid": 393310, "relation_to_type": "type", "validated": true, "ani": 76.0312, "matched_fragments": 168, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stella humosa", "strain": "strain=ATCC 43930", "accession": "GCA_006738645.1", "taxid": 94, "species_taxid": 94, "relation_to_type": "type", "validated": true, "ani": 76.0128, "matched_fragments": 190, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stella humosa", "strain": "strain=DSM 5900", "accession": "GCA_003751345.1", "taxid": 94, "species_taxid": 94, "relation_to_type": "type", "validated": true, "ani": 76.0066, "matched_fragments": 188, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Inquilinus limosus", "strain": "strain=DSM 16000", "accession": "GCA_000423185.1", "taxid": 171674, "species_taxid": 171674, "relation_to_type": "type", "validated": true, "ani": 76.0043, "matched_fragments": 199, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Skermanella pratensis", "strain": "strain=W17", "accession": "GCA_008843145.1", "taxid": 2233999, "species_taxid": 2233999, "relation_to_type": "type", "validated": true, "ani": 75.9666, "matched_fragments": 134, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella oryzae", "strain": "strain=Z-25", "accession": "GCA_023038235.1", "taxid": 2871820, "species_taxid": 2871820, "relation_to_type": "type", "validated": true, "ani": 75.9096, "matched_fragments": 105, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium jicamae", "strain": "strain=PAC68", "accession": "GCA_001440395.1", "taxid": 280332, "species_taxid": 280332, "relation_to_type": "type", "validated": true, "ani": 75.8926, "matched_fragments": 121, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Skermanella rosea", "strain": "strain=KEMB 2255-458", "accession": "GCA_016806835.2", "taxid": 1817965, "species_taxid": 1817965, "relation_to_type": "type", "validated": true, "ani": 75.8813, "matched_fragments": 154, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagibius marinus", "strain": "strain=NBU2595", "accession": "GCA_014925385.1", "taxid": 2762760, "species_taxid": 2762760, "relation_to_type": "type", "validated": true, "ani": 75.8284, "matched_fragments": 122, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niveispirillum cyanobacteriorum", "strain": "strain=TH16", "accession": "GCA_002868735.1", "taxid": 1612173, "species_taxid": 1612173, "relation_to_type": "type", "validated": true, "ani": 75.8169, "matched_fragments": 104, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niveispirillum cyanobacteriorum", "strain": "strain=CGMCC 1.12958", "accession": "GCA_014640215.1", "taxid": 1612173, "species_taxid": 1612173, "relation_to_type": "type", "validated": true, "ani": 75.8159, "matched_fragments": 104, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum rugosum", "strain": "strain=IMMIB AFH-6", "accession": "GCA_017876155.1", "taxid": 416170, "species_taxid": 416170, "relation_to_type": "type", "validated": true, "ani": 75.7905, "matched_fragments": 178, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella yambaruensis", "strain": "strain=DSM 18801", "accession": "GCA_022899355.1", "taxid": 415996, "species_taxid": 415996, "relation_to_type": "type", "validated": true, "ani": 75.7527, "matched_fragments": 127, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium hidalgonense", "strain": "strain=FH14", "accession": "GCA_002914525.1", "taxid": 1538159, "species_taxid": 1538159, "relation_to_type": "type", "validated": true, "ani": 75.7284, "matched_fragments": 109, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium hidalgonense", "strain": "strain=FH14", "accession": "GCA_002531855.1", "taxid": 1538159, "species_taxid": 1538159, "relation_to_type": "type", "validated": true, "ani": 75.7284, "matched_fragments": 109, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niveispirillum lacus", "strain": "strain=1-14", "accession": "GCA_002251795.1", "taxid": 1981099, "species_taxid": 1981099, "relation_to_type": "type", "validated": true, "ani": 75.7272, "matched_fragments": 61, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ciceribacter ferrooxidans", "strain": "strain=F8825", "accession": "GCA_004137355.1", "taxid": 2509717, "species_taxid": 2509717, "relation_to_type": "type", "validated": true, "ani": 75.5947, "matched_fragments": 93, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neorhizobium lilium", "strain": "strain=24NR", "accession": "GCA_004053875.1", "taxid": 2503024, "species_taxid": 2503024, "relation_to_type": "type", "validated": true, "ani": 75.5214, "matched_fragments": 76, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagibius litoralis", "strain": "strain=DSM 21314", "accession": "GCA_011683915.1", "taxid": 374515, "species_taxid": 374515, "relation_to_type": "type", "validated": true, "ani": 75.5109, "matched_fragments": 95, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algihabitans albus", "strain": "strain=HHTR 118", "accession": "GCA_003572205.1", "taxid": 2164067, "species_taxid": 2164067, "relation_to_type": "type", "validated": true, "ani": 75.4877, "matched_fragments": 83, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903822185.1", "gtdb_species": "s__CAIKMD01 sp903822185", "ani": 100.0, "matched_fragments": 1396, "total_fragments": 1399, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__ATCC43930;f__Stellaceae;g__CAIKMD01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.70", "min_intra_species_ani": "99.51", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCA_903828515.1", "gtdb_species": "s__CAIKMD01 sp903828515", "ani": 79.1337, "matched_fragments": 752, "total_fragments": 1399, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__ATCC43930;f__Stellaceae;g__CAIKMD01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.96", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_018971215.1", "gtdb_species": "s__REEB95 sp018971215", "ani": 77.3778, "matched_fragments": 228, "total_fragments": 1399, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__ATCC43930;f__Stellaceae;g__REEB95", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000518365.1", "gtdb_species": "s__URHD0088 sp000518365", "ani": 76.989, 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