{ "type": "genome", "identifier": "GCA_903822975.1", "organism": "uncultured Sinobacteraceae bacterium", "title": "uncultured Sinobacteraceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903822975.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6944833", "wgs_master": "CAIJRD000000000.1", "refseq_category": "na", "taxid": "694021", "species_taxid": "694021", "organism_name": "uncultured Sinobacteraceae bacterium", "infraspecific_name": "", "isolate": "MJ130729B_bin-348", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/19", "asm_name": "freshwater MAG --- MJ130729B_bin-348", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/822/975/GCA_903822975.1_freshwater_MAG_---_MJ130729B_bin-348", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-19", "dateModified": "2020-07-19", "datePublished": "2020-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Sinobacteraceae bacterium" ], "sample_taxid": [ "694021" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "1.235 MB", "sample_ph_range": { "min": 588.0, "max": 588.0 }, "sample_temperature_range": { "min": 625.0, "max": 625.0 }, "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4458857", "Number of Sequences": "20", "Longest Sequences (bp)": "986657", "N50 (bp)": "576923", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.7", "Number of CDSs": "3840", "Average Protein Length": "331.7", "Coding Ratio (%)": "85.7", "Number of rRNAs": "1", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nevskia soli", "strain": "strain=DSM 19509", "accession": "GCA_000711955.1", "taxid": 418856, "species_taxid": 418856, "relation_to_type": "type", "validated": true, "ani": 78.5561, "matched_fragments": 511, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nevskia ramosa", "strain": "strain=DSM 11499", "accession": "GCA_000420645.1", "taxid": 64002, "species_taxid": 64002, "relation_to_type": "type", "validated": true, "ani": 78.4962, "matched_fragments": 446, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solimonas soli", "strain": "strain=DSM 21787", "accession": "GCA_000474945.1", "taxid": 413479, "species_taxid": 413479, "relation_to_type": "type", "validated": true, "ani": 78.1746, "matched_fragments": 402, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solimonas flava", "strain": "strain=DSM 18980", "accession": "GCA_000426685.1", "taxid": 415849, "species_taxid": 415849, "relation_to_type": "type", "validated": true, "ani": 78.0598, "matched_fragments": 434, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solimonas variicoloris", "strain": "strain=DSM 15731", "accession": "GCA_000382285.1", "taxid": 254408, "species_taxid": 254408, "relation_to_type": "type", "validated": true, "ani": 78.0008, "matched_fragments": 442, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrocarboniphaga effusa", "strain": "strain=AP103", "accession": "GCA_000271305.1", "taxid": 243629, "species_taxid": 243629, "relation_to_type": "type", "validated": true, "ani": 77.9877, "matched_fragments": 354, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrocarboniphaga daqingensis", "strain": "strain=CGMCC 1.7049", "accession": "GCA_900129825.1", "taxid": 490188, "species_taxid": 490188, "relation_to_type": "type", "validated": true, "ani": 77.7798, "matched_fragments": 335, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Panacagrimonas perspica", "strain": "strain=DSM 26377", "accession": "GCA_004799025.1", "taxid": 381431, "species_taxid": 381431, "relation_to_type": "type", "validated": true, "ani": 77.5995, "matched_fragments": 346, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Panacagrimonas perspica", "strain": "strain=DSM 26377", "accession": "GCA_004364935.1", "taxid": 381431, "species_taxid": 381431, "relation_to_type": "type", "validated": true, "ani": 77.5765, "matched_fragments": 356, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flagellatimonas centrodinii", "strain": "strain=R2A-3", "accession": "GCA_016918765.2", "taxid": 2806210, "species_taxid": 2806210, "relation_to_type": "type", "validated": true, "ani": 76.9109, "matched_fragments": 182, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophobium rhamnosiphilum", "strain": "strain=GT1R17", "accession": "GCA_003052265.1", "taxid": 2029166, "species_taxid": 2029166, "relation_to_type": "type", "validated": true, "ani": 76.4189, "matched_fragments": 149, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frateuria flava", "strain": "strain=MAH-13", "accession": "GCA_017837635.1", "taxid": 2821489, "species_taxid": 2821489, "relation_to_type": "type", "validated": true, "ani": 76.0286, "matched_fragments": 133, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sagittaria", "strain": "strain=JCM 18195", "accession": "GCA_900115715.1", "taxid": 1135990, "species_taxid": 1135990, "relation_to_type": "type", "validated": true, "ani": 76.017, "matched_fragments": 158, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas vancouverensis", "strain": "strain=CCUG 49675", "accession": "GCA_008801375.1", "taxid": 95300, "species_taxid": 95300, "relation_to_type": "type", "validated": true, "ani": 75.9591, "matched_fragments": 81, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas azerbaijanoccidens", "strain": "strain=SWRI74", "accession": "GCA_019145495.1", "taxid": 2842347, "species_taxid": 2842347, "relation_to_type": "type", "validated": true, "ani": 75.7069, "matched_fragments": 83, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas chengduensis", "strain": "strain=MBR", "accession": "GCA_017905455.1", "taxid": 489632, "species_taxid": 489632, "relation_to_type": "type", "validated": true, "ani": 75.6131, "matched_fragments": 104, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium carmichaelinearum", "strain": "strain=ICMP 18942", "accession": "GCA_900199455.1", "taxid": 1208188, "species_taxid": 1208188, "relation_to_type": "type", "validated": true, "ani": 75.5701, "matched_fragments": 99, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas frequens", "strain": "strain=DNSP21", "accession": "GCA_024448335.1", "taxid": 2968969, 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