{ "type": "genome", "identifier": "GCA_903830015.1", "organism": "uncultured Solirubrobacterales bacterium", "title": "uncultured Solirubrobacterales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903830015.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6948212", "wgs_master": "CAIKSH000000000.1", "refseq_category": "na", "taxid": "768556", "species_taxid": "768556", "organism_name": "uncultured Solirubrobacterales bacterium", "infraspecific_name": "", "isolate": "LaPlata-15m-a_bin-383", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/17", "asm_name": "freshwater MAG --- LaPlata-15m-a_bin-383", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/830/015/GCA_903830015.1_freshwater_MAG_---_LaPlata-15m-a_bin-383", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-17", "dateModified": "2020-07-17", "datePublished": "2020-07-17", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Solirubrobacterales bacterium" ], "sample_taxid": [ "768556" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Puerto Rico" ], "sample_host_location_id": [], "data_size": "0.457 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 81.77, "contamination": 3.16, "strain_heterogeneity": 60.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1684962", "Number of Sequences": "384", "Longest Sequences (bp)": "21787", "N50 (bp)": "5438", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.0", "Number of CDSs": "1353", "Average Protein Length": "288.6", "Coding Ratio (%)": "69.5", "Number of rRNAs": "0", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Baekduia soli", "strain": "strain=BR7-21", "accession": "GCA_007970665.1", "taxid": 496014, "species_taxid": 496014, "relation_to_type": "type", "validated": true, "ani": 77.7538, "matched_fragments": 169, "total_fragments": 347, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Capillimicrobium parvum", "strain": "strain=0166_1", "accession": "GCA_021172045.1", "taxid": 2884022, "species_taxid": 2884022, "relation_to_type": "type", "validated": true, "ani": 77.7237, "matched_fragments": 160, "total_fragments": 347, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Conexibacter arvalis", "strain": "strain=DSM 23288", "accession": "GCA_014199525.1", "taxid": 912552, "species_taxid": 912552, "relation_to_type": "type", "validated": true, "ani": 77.522, "matched_fragments": 177, "total_fragments": 347, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraconexibacter algicola", "strain": "strain=Seoho-28", "accession": "GCA_003044185.1", "taxid": 2133960, "species_taxid": 2133960, "relation_to_type": "type", "validated": true, "ani": 77.4253, "matched_fragments": 155, "total_fragments": 347, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Conexibacter woesei", "strain": "strain=DSM 14684", "accession": "GCA_000025265.1", "taxid": 191495, "species_taxid": 191495, "relation_to_type": "type", "validated": true, "ani": 77.2858, "matched_fragments": 157, "total_fragments": 347, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Patulibacter medicamentivorans", "strain": "strain=I11", "accession": "GCA_000240225.2", "taxid": 1097667, "species_taxid": 1097667, "relation_to_type": "type", "validated": true, "ani": 76.9747, "matched_fragments": 153, "total_fragments": 347, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solirubrobacter pauli", "strain": "strain=DSM 14954", "accession": "GCA_003633755.1", "taxid": 166793, "species_taxid": 166793, "relation_to_type": "type", "validated": true, "ani": 76.9126, "matched_fragments": 145, "total_fragments": 347, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Patulibacter americanus", "strain": "strain=DSM 16676", "accession": "GCA_000420025.1", "taxid": 588672, "species_taxid": 588672, "relation_to_type": "type", "validated": true, "ani": 76.6588, "matched_fragments": 110, "total_fragments": 347, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Patulibacter minatonensis", "strain": "strain=DSM 18081", "accession": "GCA_000519325.1", "taxid": 298163, "species_taxid": 298163, "relation_to_type": "type", "validated": true, "ani": 76.5867, "matched_fragments": 117, "total_fragments": 347, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ginsengisegetis", "strain": "strain=DSM 21349", "accession": "GCA_014138045.1", "taxid": 661491, "species_taxid": 661491, "relation_to_type": "type", "validated": true, "ani": 75.5817, "matched_fragments": 64, "total_fragments": 347, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides dongkuii", "strain": "strain=S-713", "accession": "GCA_014127485.1", "taxid": 2760089, "species_taxid": 2760089, "relation_to_type": "type", "validated": true, "ani": 75.3129, "matched_fragments": 63, "total_fragments": 347, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 81.77, "contamination": 3.16, "strain_heterogeneity": 60.0 }, "gtdb_result": [ { "accession": "GCA_903830015.1", "gtdb_species": "s__F1-60-MAGs163 sp903830015", "ani": 100.0, "matched_fragments": 341, "total_fragments": 347, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__F1-60-MAGs163", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.97", "min_intra_species_ani": "95.76", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.75", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCA_017882425.1", "gtdb_species": "s__F1-60-MAGs163 sp017882425", "ani": 78.181, "matched_fragments": 160, "total_fragments": 347, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__F1-60-MAGs163", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009699245.1", "gtdb_species": "s__F1-60-MAGs163 sp009699245", "ani": 78.1397, "matched_fragments": 144, "total_fragments": 347, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__F1-60-MAGs163", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903959665.1", "gtdb_species": "s__F1-60-MAGs163 sp903959665", "ani": 77.9146, "matched_fragments": 114, "total_fragments": 347, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__F1-60-MAGs163", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.27", "min_intra_species_ani": "99.00", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.79", "num_clustered_genomes": 34, "status": "-" }, { "accession": "GCF_017084525.1", "gtdb_species": "s__Baekduia sp017084525", "ani": 77.6837, "matched_fragments": 176, "total_fragments": 347, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__Baekduia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009699915.1", "gtdb_species": "s__F1-60-MAGs163 sp009699915", "ani": 77.6811, "matched_fragments": 94, "total_fragments": 347, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__F1-60-MAGs163", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { 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75.8575, "matched_fragments": 88, "total_fragments": 347, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__Patulibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.213, "cell_length": 0.099, "doubling_h": null, "growth_tmp": 27.09, "optimum_tmp": 28.319, "optimum_ph": 7.166, "genome_size": 6283395.178, "gc_content": 73.35, "coding_genes": 5870.0, "rRNA16S_genes": 1.0, "tRNA_genes": 45.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.714, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Thermoleophilia", "o__Solirubrobacterales", "f__Solirubrobacteraceae", "g__F1-60-MAGs163", "s__F1-60-MAGs163 sp903830015" ], "_genome_taxon": [ "uncultured", "Solirubrobacterales", "bacterium", "d__Bacteria", "p__Actinomycetota", "c__Thermoleophilia", "o__Solirubrobacterales", "f__Solirubrobacteraceae", "g__F1-60-MAGs163", "s__F1-60-MAGs163 sp903830015", "Bacteria", "Actinomycetota", "Thermoleophilia", "Solirubrobacterales", "Solirubrobacteraceae", "F1-60-MAGs163", "F1-60-MAGs163", "sp903830015" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }