<?xml version="1.0" ?>
<BioSampleSet><BioSample submission_date="2020-06-16T16:20:10.390" last_update="2020-06-17T17:13:14.380" publication_date="2020-06-17T17:13:14.380" access="public" id="15259730" accession="SAMEA6948116">   <Ids>     <Id db="BioSample">SAMEA6948116</Id>     <Id db="BILS" db_label="Sample name">Ja1-D2_bin-2264</Id>     <Id db="SRA" is_primary="1">ERS4657997</Id>   </Ids>   <Description>     <Title>MAG Ja1-D2_bin-2264 from assembly ERS4600412</Title>     <Organism taxonomy_id="181674" taxonomy_name="uncultured Methylococcaceae bacterium"/>   </Description>   <Owner>     <Name abbreviation="EBI">European Bioinformatics Institute</Name>     <Contacts>       <Contact lab="European Nucleotide Archive"/>     </Contacts>   </Owner>   <Models>     <Model>Generic</Model>   </Models>   <Package display_name="Generic">Generic.1.0</Package>   <Attributes>     <Attribute attribute_name="sequencing method">NovaSeq</Attribute>     <Attribute attribute_name="assembly software">megahit</Attribute>     <Attribute attribute_name="completeness software">checkm</Attribute>     <Attribute attribute_name="binning software">metabat</Attribute>     <Attribute attribute_name="assembly quality">Many fragments with little to no review of assembly other than reporting of standard assembly statistics</Attribute>     <Attribute attribute_name="investigation type" harmonized_name="investigation_type" display_name="investigation type">metagenome</Attribute>     <Attribute attribute_name="binning parameters">min_len:1500,min_bin_size:10000,maxP:93,minS:50</Attribute>     <Attribute attribute_name="taxonomic identity marker">gtdbtk followed by sourmash-lca, see publication</Attribute>     <Attribute attribute_name="isolation_source" harmonized_name="isolation_source" display_name="isolation source">freshwater</Attribute>     <Attribute attribute_name="metagenomic source">freshwater metagenome</Attribute>     <Attribute attribute_name="completeness score" unit="%">96.06</Attribute>     <Attribute attribute_name="contamination score" unit="%">1.86</Attribute>     <Attribute attribute_name="gtdb_taxonomy">d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methylovulum</Attribute>     <Attribute attribute_name="metagenomic OTU">anoxic_mOTU_0150</Attribute>     <Attribute attribute_name="sample derived from">ERS4600412</Attribute>     <Attribute attribute_name="site name">Lomtjärnan (703480-142137)</Attribute>     <Attribute attribute_name="Lake_code">Ja1</Attribute>     <Attribute attribute_name="geographic location (country and/or sea)" harmonized_name="geo_loc_name" display_name="geographic location">Sweden</Attribute>     <Attribute attribute_name="region">Jämtland</Attribute>     <Attribute attribute_name="environment (biome)" harmonized_name="env_broad_scale" display_name="broad-scale environmental context">lentic water body</Attribute>     <Attribute attribute_name="environment (feature)" harmonized_name="env_local_scale" display_name="local-scale environmental context">lake</Attribute>     <Attribute attribute_name="environment (material)" harmonized_name="env_medium" display_name="environmental medium">water</Attribute>     <Attribute attribute_name="geographic location (depth)" unit="m">2.2</Attribute>     <Attribute attribute_name="oxygen" unit="mg/L" harmonized_name="oxygen" display_name="oxygen">3</Attribute>     <Attribute attribute_name="methane" unit="µmol/L" harmonized_name="methane" display_name="methane">18.82822777</Attribute>     <Attribute attribute_name="dissolved carbon dioxide" unit="µmol/L" harmonized_name="diss_carb_dioxide" display_name="dissolved carbon dioxide">1313.950667</Attribute>     <Attribute attribute_name="ph" harmonized_name="ph" display_name="pH">6.8</Attribute>     <Attribute attribute_name="collection date" harmonized_name="collection_date" display_name="collection date">2018-07-05</Attribute>     <Attribute attribute_name="ammonium" unit="µmol/L" harmonized_name="ammonium" display_name="ammonium">2.05111148068075</Attribute>     <Attribute attribute_name="nitrate" unit="µmol/L" harmonized_name="nitrate" display_name="nitrate">0.387066183479048</Attribute>     <Attribute attribute_name="phosphate" unit="µmol/L" harmonized_name="phosphate" display_name="phosphate">0.07370640003201</Attribute>     <Attribute attribute_name="sulfate" unit="mg/L" harmonized_name="sulfate" display_name="sulfate">2.968</Attribute>     <Attribute attribute_name="dissolved organic carbon" unit="µmol/L" harmonized_name="diss_org_carb" display_name="dissolved organic carbon">1806.7223392475</Attribute>     <Attribute attribute_name="total dissolved nitrogen" unit="µg/L" harmonized_name="tot_diss_nitro" display_name="total dissolved nitrogen">680</Attribute>     <Attribute attribute_name="sample owner">Gaetan Martin</Attribute>     <Attribute attribute_name="geographic location (longitude)" unit="DD">63.34938888888889</Attribute>     <Attribute attribute_name="geographic location (latitude)" unit="DD">14.458944444444445</Attribute>     <Attribute attribute_name="project name" harmonized_name="project_name" display_name="project name">microbes in stratified freshwaters</Attribute>     <Attribute attribute_name="collection data">metagenome</Attribute>     <Attribute attribute_name="water environmental package">water</Attribute>     <Attribute attribute_name="ENA-FIRST-PUBLIC">2020-06-15</Attribute>     <Attribute attribute_name="ENA-LAST-UPDATE">2020-06-12</Attribute>   </Attributes>   <Status status="live" when="2020-06-17T17:13:14.380"/> </BioSample> </BioSampleSet>
