{ "type": "genome", "identifier": "GCA_903830145.1", "organism": "uncultured Actinomycetes bacterium", "title": "uncultured Actinomycetes bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903830145.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6946050", "wgs_master": "CAIKSS000000000.1", "refseq_category": "na", "taxid": "152507", "species_taxid": "152507", "organism_name": "uncultured Actinomycetes bacterium", "infraspecific_name": "", "isolate": "LaPlata-1m-a_bin-207", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/18", "asm_name": "freshwater MAG --- LaPlata-1m-a_bin-207", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/830/145/GCA_903830145.1_freshwater_MAG_---_LaPlata-1m-a_bin-207", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-18", "dateModified": "2020-07-18", "datePublished": "2020-07-18", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Actinomycetes bacterium" ], "sample_taxid": [ "152507" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Puerto Rico" ], "sample_host_location_id": [], "data_size": "0.662 MB", "sample_ph_range": { "min": 835.0, "max": 835.0 }, "sample_temperature_range": { "min": 3018.0, "max": 3018.0 }, "completeness": 80.99, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2404341", "Number of Sequences": "880", "Longest Sequences (bp)": "9289", "N50 (bp)": "2900", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.9", "Number of CDSs": "1483", "Average Protein Length": "275.5", "Coding Ratio (%)": "51.0", "Number of rRNAs": "0", "Number of tRNAs": "30", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycolicibacterium anyangense", "strain": "strain=JCM 30275", "accession": "GCA_010731855.1", "taxid": 1431246, "species_taxid": 1431246, "relation_to_type": "type", "validated": true, "ani": 79.4665, "matched_fragments": 203, "total_fragments": 282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium pallens", "strain": "strain=JCM 16370", "accession": "GCA_019456675.1", "taxid": 370524, "species_taxid": 370524, "relation_to_type": "type", "validated": true, "ani": 79.2137, "matched_fragments": 193, "total_fragments": 282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fallax", "strain": "strain=DSM 44179", "accession": "GCA_002101995.1", "taxid": 1793, "species_taxid": 1793, "relation_to_type": "type", "validated": true, "ani": 79.2126, "matched_fragments": 179, "total_fragments": 282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fallax", "strain": "strain=JCM 6405", "accession": "GCA_010726955.1", "taxid": 1793, "species_taxid": 1793, "relation_to_type": "type", "validated": true, "ani": 79.1898, "matched_fragments": 176, "total_fragments": 282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter senuensis", "strain": "strain=DSM 44999", "accession": "GCA_002101885.1", "taxid": 386913, "species_taxid": 386913, "relation_to_type": "type", "validated": true, "ani": 79.1252, "matched_fragments": 153, "total_fragments": 282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter longobardus", "strain": "strain=DSM 45394", "accession": "GCA_002102265.1", "taxid": 1108812, "species_taxid": 1108812, "relation_to_type": "type", "validated": true, "ani": 79.1, "matched_fragments": 154, "total_fragments": 282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter senuensis", "strain": "strain=JCM 16017", "accession": "GCA_010723225.1", "taxid": 386913, "species_taxid": 386913, "relation_to_type": "type", "validated": true, "ani": 79.0682, "matched_fragments": 155, "total_fragments": 282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium crocinum", "strain": "strain=JCM 16369", "accession": "GCA_022370635.3", "taxid": 388459, "species_taxid": 388459, "relation_to_type": "type", "validated": true, "ani": 79.0654, "matched_fragments": 189, "total_fragments": 282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium avium subsp. avium", "strain": "strain=DSM 44156", "accession": "GCA_009741445.1", "taxid": 44454, "species_taxid": 1764, "relation_to_type": "type", "validated": true, "ani": 79.0182, "matched_fragments": 173, "total_fragments": 282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium avium subsp. avium", "strain": "strain=ATCC 25291", "accession": "GCA_000174035.1", "taxid": 44454, "species_taxid": 1764, "relation_to_type": "type", "validated": true, "ani": 79.0063, "matched_fragments": 167, "total_fragments": 282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium rhodesiae", "strain": "strain=DSM 44223", "accession": "GCA_002086695.1", "taxid": 36814, "species_taxid": 36814, "relation_to_type": "type", "validated": true, "ani": 78.9525, "matched_fragments": 189, "total_fragments": 282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium helvum", "strain": "strain=JCM 30396", "accession": "GCA_010731895.1", "taxid": 1534349, "species_taxid": 1534349, "relation_to_type": "type", "validated": true, "ani": 78.9167, "matched_fragments": 179, "total_fragments": 282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter kumamotonensis", "strain": "strain=DSM 45093", "accession": "GCA_002086285.1", "taxid": 354243, "species_taxid": 354243, "relation_to_type": "type", "validated": true, "ani": 78.8252, "matched_fragments": 155, "total_fragments": 282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium parmense", "strain": "strain=JCM 14742", "accession": "GCA_010730575.1", "taxid": 185642, "species_taxid": 185642, "relation_to_type": "type", "validated": true, "ani": 78.7804, "matched_fragments": 150, "total_fragments": 282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium parmense", "strain": "strain=DSM 44553", "accession": "GCA_002102335.1", "taxid": 185642, "species_taxid": 185642, "relation_to_type": "type", "validated": true, "ani": 78.7495, "matched_fragments": 148, "total_fragments": 282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium cosmeticum", "strain": "strain=DSM 44829", "accession": "GCA_005670675.1", "taxid": 258533, "species_taxid": 258533, "relation_to_type": "type", "validated": true, "ani": 78.6382, "matched_fragments": 175, "total_fragments": 282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium cosmeticum", "strain": "strain=DSM 44829", "accession": "GCA_000613185.1", "taxid": 258533, "species_taxid": 258533, "relation_to_type": "type", "validated": true, "ani": 78.5979, "matched_fragments": 174, "total_fragments": 282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter kumamotonensis", "strain": "strain=CST 7247", "accession": "GCA_010093495.1", "taxid": 354243, "species_taxid": 354243, "relation_to_type": "type", "validated": true, "ani": 78.5897, "matched_fragments": 156, "total_fragments": 282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium sarraceniae", "strain": "strain=JCM 30395", "accession": "GCA_010731875.1", "taxid": 1534348, "species_taxid": 1534348, "relation_to_type": "type", "validated": true, "ani": 78.5282, "matched_fragments": 165, "total_fragments": 282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter engbaekii", "strain": "strain=ATCC 27353", "accession": "GCA_002101585.1", "taxid": 188915, "species_taxid": 188915, "relation_to_type": "type", "validated": true, "ani": 78.509, "matched_fragments": 146, "total_fragments": 282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium lacusdiani", "strain": "strain=JXJ CY 35", "accession": "GCA_021916785.1", "taxid": 2895283, "species_taxid": 2895283, "relation_to_type": "type", "validated": true, "ani": 78.3344, "matched_fragments": 164, "total_fragments": 282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium aurum", "strain": "strain=NCTC10437", "accession": "GCA_900637195.1", "taxid": 1791, "species_taxid": 1791, "relation_to_type": "type", "validated": true, "ani": 78.2427, "matched_fragments": 157, "total_fragments": 282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium stomatepiae", "strain": "strain=JCM 17783", "accession": "GCA_010731715.1", "taxid": 470076, "species_taxid": 470076, "relation_to_type": "type", "validated": true, "ani": 78.2196, "matched_fragments": 136, "total_fragments": 282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium aurum", "strain": "strain=NCTC 10437", "accession": "GCA_001049355.1", "taxid": 1791, "species_taxid": 1791, "relation_to_type": "type", "validated": true, "ani": 78.2005, "matched_fragments": 158, "total_fragments": 282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium ahvazicum", "strain": "strain=AFP003", "accession": "GCA_900176255.2", "taxid": 1964395, "species_taxid": 1964395, "relation_to_type": "type", "validated": true, "ani": 78.0283, "matched_fragments": 157, "total_fragments": 282, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 80.99, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_018882965.1", "gtdb_species": "s__Mycobacterium sp018882965", "ani": 84.7233, "matched_fragments": 266, "total_fragments": 282, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017853185.1", "gtdb_species": "s__Mycobacterium sp017853185", "ani": 80.3945, "matched_fragments": 191, "total_fragments": 282, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018883075.1", "gtdb_species": "s__Mycobacterium sp018883075", "ani": 80.2761, "matched_fragments": 173, "total_fragments": 282, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011694515.1", "gtdb_species": "s__Mycobacterium sp011694515", "ani": 80.1501, "matched_fragments": 193, "total_fragments": 282, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001494595.1", "gtdb_species": "s__Mycobacterium sp001494595", "ani": 80.0487, "matched_fragments": 211, "total_fragments": 282, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002723835.1", "gtdb_species": "s__Mycobacterium sp002723835", "ani": 79.5383, "matched_fragments": 202, "total_fragments": 282, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010731855.1", "gtdb_species": "s__Mycobacterium anyangense", "ani": 79.4419, "matched_fragments": 204, "total_fragments": 282, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018882545.1", "gtdb_species": "s__Mycobacterium sp018882545", "ani": 79.435, "matched_fragments": 149, "total_fragments": 282, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005787665.1", "gtdb_species": "s__Mycobacterium sp005787665", "ani": 79.4173, "matched_fragments": 178, "total_fragments": 282, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903862565.1", "gtdb_species": "s__Mycobacterium sp903862565", "ani": 79.3972, "matched_fragments": 190, "total_fragments": 282, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010726955.1", "gtdb_species": "s__Mycobacterium fallax", "ani": 79.2293, "matched_fragments": 176, "total_fragments": 282, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002101885.1", "gtdb_species": "s__Mycobacterium senuense", "ani": 79.1252, "matched_fragments": 153, "total_fragments": 282, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002102265.1", "gtdb_species": "s__Mycobacterium longobardum", "ani": 79.1, "matched_fragments": 154, "total_fragments": 282, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002102395.1", "gtdb_species": "s__Mycobacterium triviale", "ani": 79.0996, "matched_fragments": 164, "total_fragments": 282, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004362315.1", "gtdb_species": "s__Mycobacterium sp004362315", "ani": 79.0327, "matched_fragments": 195, "total_fragments": 282, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.02", "min_intra_species_ani": "98.99", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_009741445.1", "gtdb_species": "s__Mycobacterium avium", "ani": 79.0182, "matched_fragments": 173, "total_fragments": 282, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 96.9043, "mean_intra_species_ani": "98.75", "min_intra_species_ani": "98.29", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.84", "num_clustered_genomes": 206, "status": "-" }, { "accession": "GCF_001667375.1", "gtdb_species": "s__Mycobacterium sinense_A", "ani": 78.8914, "matched_fragments": 151, "total_fragments": 282, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.51", "min_intra_species_ani": "95.04", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_018455725.1", "gtdb_species": "s__Mycobacterium sp018455725", "ani": 78.8083, "matched_fragments": 169, "total_fragments": 282, "gtdb_taxonomy": 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