{
    "type": "genome",
    "identifier": "GCA_903830365.1",
    "organism": "uncultured proteobacterium",
    "title": "uncultured proteobacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "BILS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_903830365.1",
        "bioproject": "PRJEB38681",
        "biosample": "SAMEA6948825",
        "wgs_master": "CAIKTN000000000.1",
        "refseq_category": "na",
        "taxid": "153809",
        "species_taxid": "153809",
        "organism_name": "uncultured proteobacterium",
        "infraspecific_name": "",
        "isolate": "Erken-D7_bin-0759",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/18",
        "asm_name": "freshwater MAG --- Erken-D7_bin-0759",
        "submitter": "BILS",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/830/365/GCA_903830365.1_freshwater_MAG_---_Erken-D7_bin-0759",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-18",
    "dateModified": "2020-07-18",
    "datePublished": "2020-07-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured proteobacterium"
        ],
        "sample_taxid": [
            "153809"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Sweden"
        ],
        "sample_host_location_id": [],
        "data_size": "0.592 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 157.0,
            "max": 157.0
        },
        "completeness": 60.94,
        "contamination": 9.9,
        "strain_heterogeneity": 20.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2055368",
        "Number of Sequences": "638",
        "Longest Sequences (bp)": "14764",
        "N50 (bp)": "3569",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "45.0",
        "Number of CDSs": "1476",
        "Average Protein Length": "261.0",
        "Coding Ratio (%)": "56.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "14",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Methylomonas denitrificans",
                "strain": "strain=FJG1",
                "accession": "GCA_000785705.2",
                "taxid": 1538553,
                "species_taxid": 1538553,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9161,
                "matched_fragments": 92,
                "total_fragments": 317,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylomonas albis",
                "strain": "strain=EbA",
                "accession": "GCA_014850955.1",
                "taxid": 1854563,
                "species_taxid": 1854563,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9085,
                "matched_fragments": 86,
                "total_fragments": 317,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylomonas koyamae",
                "strain": "strain=JCM 16701",
                "accession": "GCA_001312005.1",
                "taxid": 702114,
                "species_taxid": 702114,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.6678,
                "matched_fragments": 61,
                "total_fragments": 317,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylomonas koyamae",
                "strain": "strain=Fw12E-Y",
                "accession": "GCA_019669905.1",
                "taxid": 702114,
                "species_taxid": 702114,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.6576,
                "matched_fragments": 63,
                "total_fragments": 317,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 60.94,
            "contamination": 9.9,
            "strain_heterogeneity": 20.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_903918375.1",
                "gtdb_species": "s__Methylomonas sp903918375",
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                "matched_fragments": 260,
                "total_fragments": 317,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methylomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.06",
                "min_intra_species_ani": "95.20",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 8,
                "status": "conclusive"
            },
            {
                "accession": "GCA_903931355.1",
                "gtdb_species": "s__Methylomonas sp903931355",
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                "matched_fragments": 193,
                "total_fragments": 317,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methylomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903902945.1",
                "gtdb_species": "s__Methylomonas sp903902945",
                "ani": 77.9325,
                "matched_fragments": 98,
                "total_fragments": 317,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methylomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000515215.1",
                "gtdb_species": "s__Methylomonas sp000515215",
                "ani": 77.5361,
                "matched_fragments": 93,
                "total_fragments": 317,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methylomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.46",
                "min_intra_species_ani": "95.46",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002928965.1",
                "gtdb_species": "s__Methylomonas sp002928965",
                "ani": 77.5209,
                "matched_fragments": 74,
                "total_fragments": 317,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methylomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002083615.1",
                "gtdb_species": "s__Methylomonas sp002083615",
                "ani": 77.2534,
                "matched_fragments": 72,
                "total_fragments": 317,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methylomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000214665.1",
                "gtdb_species": "s__Methylomonas methanica_B",
                "ani": 77.1673,
                "matched_fragments": 66,
                "total_fragments": 317,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methylomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001644035.1",
                "gtdb_species": "s__Methylomonas methanica_A",
                "ani": 77.1384,
                "matched_fragments": 95,
                "total_fragments": 317,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methylomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.96",
                "min_intra_species_ani": "95.96",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903858105.1",
                "gtdb_species": "s__Methylomonas sp903858105",
                "ani": 77.0148,
                "matched_fragments": 71,
                "total_fragments": 317,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methylomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001644015.1",
                "gtdb_species": "s__Methylomonas lenta",
                "ani": 76.9836,
                "matched_fragments": 72,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methylomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_903064715.1",
                "gtdb_species": "s__Methylomonas sp903064715",
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                "matched_fragments": 85,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methylomonas",
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                "mean_intra_species_ani": "100.00",
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                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_001644045.1",
                "gtdb_species": "s__Methylomonas methanica",
                "ani": 76.8729,
                "matched_fragments": 92,
                "total_fragments": 317,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methylomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_903928685.1",
                "gtdb_species": "s__Methylovulum sp903928685",
                "ani": 76.4627,
                "matched_fragments": 51,
                "total_fragments": 317,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methylovulum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.91",
                "min_intra_species_ani": "99.86",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 8,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Methylococcales",
        "f__Methylomonadaceae",
        "g__Methylomonas",
        "s__Methylomonas sp903918375"
    ],
    "_genome_taxon": [
        "uncultured",
        "proteobacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Methylococcales",
        "f__Methylomonadaceae",
        "g__Methylomonas",
        "s__Methylomonas sp903918375",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Methylococcales",
        "Methylomonadaceae",
        "Methylomonas",
        "Methylomonas",
        "sp903918375"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}