{ "type": "genome", "identifier": "GCA_903830775.1", "organism": "uncultured Chloroflexota bacterium", "title": "uncultured Chloroflexota bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903830775.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6951149", "wgs_master": "CAIKVD000000000.1", "refseq_category": "na", "taxid": "166587", "species_taxid": "166587", "organism_name": "uncultured Chloroflexota bacterium", "infraspecific_name": "", "isolate": "Erken-D1_bin-0675", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/16", "asm_name": "freshwater MAG --- Erken-D1_bin-0675", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/830/775/GCA_903830775.1_freshwater_MAG_---_Erken-D1_bin-0675", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-16", "dateModified": "2020-07-16", "datePublished": "2020-07-16", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Chloroflexota bacterium" ], "sample_taxid": [ "166587" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "0.264 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 236.0, "max": 236.0 }, "completeness": 77.84, "contamination": 5.21, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "928399", "Number of Sequences": "321", "Longest Sequences (bp)": "16698", "N50 (bp)": "2953", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.7", "Number of CDSs": "603", "Average Protein Length": "269.8", "Coding Ratio (%)": "52.6", "Number of rRNAs": "0", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 77.84, "contamination": 5.21, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_903937225.1", "gtdb_species": "s__Limnocylindrus sp903937225", "ani": 94.7836, "matched_fragments": 93, "total_fragments": 120, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__Limnocylindraceae;g__Limnocylindrus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003476885.1", "gtdb_species": "s__Limnocylindrus sp003476885", "ani": 94.3203, "matched_fragments": 96, "total_fragments": 120, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__Limnocylindraceae;g__Limnocylindrus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903944295.1", "gtdb_species": "s__Limnocylindrus sp903944295", "ani": 81.888, "matched_fragments": 73, "total_fragments": 120, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__Limnocylindraceae;g__Limnocylindrus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.38", "min_intra_species_ani": "99.18", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.81", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCA_003670475.1", "gtdb_species": "s__Limnocylindrus sp003670475", "ani": 81.6049, "matched_fragments": 75, "total_fragments": 120, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__Limnocylindraceae;g__Limnocylindrus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.28", "min_intra_species_ani": "98.28", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903847005.1", "gtdb_species": "s__Limnocylindrus sp903847005", "ani": 81.0869, "matched_fragments": 72, "total_fragments": 120, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__Limnocylindraceae;g__Limnocylindrus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Chloroflexota", "c__Limnocylindria", "o__Limnocylindrales", "f__Limnocylindraceae", "g__Limnocylindrus", "s__Limnocylindrus sp903937225" ], "_genome_taxon": [ "uncultured", "Chloroflexota", "bacterium", "d__Bacteria", "p__Chloroflexota", "c__Limnocylindria", "o__Limnocylindrales", "f__Limnocylindraceae", "g__Limnocylindrus", "s__Limnocylindrus sp903937225", "Bacteria", "Chloroflexota", "Limnocylindria", "Limnocylindrales", "Limnocylindraceae", "Limnocylindrus", "Limnocylindrus", "sp903937225" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }