{ "type": "genome", "identifier": "GCA_903832765.1", "organism": "uncultured proteobacterium", "title": "uncultured proteobacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903832765.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6944799", "wgs_master": "CAILCY000000000.1", "refseq_category": "na", "taxid": "153809", "species_taxid": "153809", "organism_name": "uncultured proteobacterium", "infraspecific_name": "", "isolate": "Ki3-D2_bin-1505", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/17", "asm_name": "freshwater MAG --- Ki3-D2_bin-1505", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/832/765/GCA_903832765.1_freshwater_MAG_---_Ki3-D2_bin-1505", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-17", "dateModified": "2020-07-17", "datePublished": "2020-07-17", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured proteobacterium" ], "sample_taxid": [ "153809" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "0.374 MB", "sample_ph_range": { "min": 661.0, "max": 661.0 }, "sample_temperature_range": { "min": 79.0, "max": 79.0 }, "completeness": 37.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1293341", "Number of Sequences": "379", "Longest Sequences (bp)": "16141", "N50 (bp)": "3758", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.7", "Number of CDSs": "942", "Average Protein Length": "270.3", "Coding Ratio (%)": "59.1", "Number of rRNAs": "0", "Number of tRNAs": "17", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methylotenera versatilis", "strain": "strain=301", "accession": "GCA_000093025.1", "taxid": 1055487, "species_taxid": 1055487, "relation_to_type": "type", "validated": true, "ani": 78.0664, "matched_fragments": 108, "total_fragments": 221, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 37.5, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903833595.1", "gtdb_species": "s__Methylotenera sp903833595", "ani": 97.6955, "matched_fragments": 204, "total_fragments": 221, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.98", "min_intra_species_ani": "97.98", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_009693255.1", "gtdb_species": "s__Methylotenera sp009693255", "ani": 82.0125, "matched_fragments": 160, "total_fragments": 221, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.85", "min_intra_species_ani": "99.85", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903876765.1", "gtdb_species": "s__Methylotenera sp903876765", "ani": 81.5545, "matched_fragments": 178, "total_fragments": 221, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_903846555.1", "gtdb_species": "s__Methylotenera sp903846555", "ani": 78.1926, "matched_fragments": 104, "total_fragments": 221, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000093025.1", "gtdb_species": "s__Methylotenera versatilis", "ani": 78.0664, "matched_fragments": 108, "total_fragments": 221, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013141075.1", "gtdb_species": "s__Methylotenera sp013141075", "ani": 77.92, "matched_fragments": 84, "total_fragments": 221, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.66", "min_intra_species_ani": "97.66", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903854305.1", "gtdb_species": "s__Methylotenera sp903854305", "ani": 77.8014, "matched_fragments": 92, "total_fragments": 221, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001803395.1", "gtdb_species": "s__Methylotenera sp001803395", "ani": 77.7268, "matched_fragments": 86, "total_fragments": 221, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005791685.1", "gtdb_species": "s__Methylotenera sp005791685", "ani": 77.6459, "matched_fragments": 75, "total_fragments": 221, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.44", "min_intra_species_ani": "99.44", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002842195.1", "gtdb_species": "s__Methylotenera sp002842195", "ani": 77.3741, "matched_fragments": 62, "total_fragments": 221, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903838125.1", "gtdb_species": "s__Methylotenera sp903838125", "ani": 77.2795, "matched_fragments": 57, "total_fragments": 221, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.83", "min_intra_species_ani": "99.83", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_013141495.1", "gtdb_species": "s__Methylotenera sp013141495", "ani": 77.234, "matched_fragments": 71, "total_fragments": 221, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.86", "min_intra_species_ani": "98.86", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__Methylophilaceae", "g__Methylotenera", "s__Methylotenera sp903833595" ], "_genome_taxon": [ "uncultured", "proteobacterium", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__Methylophilaceae", "g__Methylotenera", "s__Methylotenera sp903833595", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Burkholderiales", "Methylophilaceae", "Methylotenera", "Methylotenera", "sp903833595" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }