{
    "type": "genome",
    "identifier": "GCA_903832865.1",
    "organism": "uncultured Chlorobiaceae bacterium",
    "title": "uncultured Chlorobiaceae bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "BILS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_903832865.1",
        "bioproject": "PRJEB38681",
        "biosample": "SAMEA6944881",
        "wgs_master": "CAILDC000000000.1",
        "refseq_category": "na",
        "taxid": "243904",
        "species_taxid": "243904",
        "organism_name": "uncultured Chlorobiaceae bacterium",
        "infraspecific_name": "",
        "isolate": "Day6-2_bin-427",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/18",
        "asm_name": "freshwater MAG --- Day6-2_bin-427",
        "submitter": "BILS",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/832/865/GCA_903832865.1_freshwater_MAG_---_Day6-2_bin-427",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-18",
    "dateModified": "2020-07-18",
    "datePublished": "2020-07-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Chlorobiaceae bacterium"
        ],
        "sample_taxid": [
            "243904"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Sweden"
        ],
        "sample_host_location_id": [],
        "data_size": "0.591 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 24.0,
            "max": 24.0
        },
        "completeness": 72.57,
        "contamination": 8.33,
        "strain_heterogeneity": 33.33,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2043420",
        "Number of Sequences": "567",
        "Longest Sequences (bp)": "22367",
        "N50 (bp)": "4159",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "48.2",
        "Number of CDSs": "1365",
        "Average Protein Length": "291.7",
        "Coding Ratio (%)": "58.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "23",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Pelodictyon phaeoclathratiforme",
                "strain": "strain=BU-1",
                "accession": "GCA_000020645.1",
                "taxid": 34090,
                "species_taxid": 34090,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8711,
                "matched_fragments": 269,
                "total_fragments": 355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlorobium ferrooxidans",
                "strain": "strain=DSM 13031",
                "accession": "GCA_000168715.1",
                "taxid": 84205,
                "species_taxid": 84205,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.826,
                "matched_fragments": 167,
                "total_fragments": 355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlorobium limicola",
                "strain": "strain=DSM 245",
                "accession": "GCA_000020465.1",
                "taxid": 1092,
                "species_taxid": 1092,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8437,
                "matched_fragments": 79,
                "total_fragments": 355,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 72.57,
            "contamination": 8.33,
            "strain_heterogeneity": 33.33
        },
        "gtdb_result": [
            {
                "accession": "GCA_903865705.1",
                "gtdb_species": "s__Chlorobium sp903865705",
                "ani": 98.9766,
                "matched_fragments": 319,
                "total_fragments": 355,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.47",
                "min_intra_species_ani": "99.06",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCA_903820085.1",
                "gtdb_species": "s__Chlorobium sp903820085",
                "ani": 86.2802,
                "matched_fragments": 308,
                "total_fragments": 355,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.89",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 15,
                "status": "-"
            },
            {
                "accession": "GCA_903942355.1",
                "gtdb_species": "s__Chlorobium sp903942355",
                "ani": 85.545,
                "matched_fragments": 229,
                "total_fragments": 355,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.73",
                "min_intra_species_ani": "99.73",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903822595.1",
                "gtdb_species": "s__Chlorobium sp903822595",
                "ani": 83.4607,
                "matched_fragments": 283,
                "total_fragments": 355,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.84",
                "min_intra_species_ani": "99.77",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_903882665.1",
                "gtdb_species": "s__Chlorobium sp903882665",
                "ani": 83.2166,
                "matched_fragments": 291,
                "total_fragments": 355,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.16",
                "min_intra_species_ani": "98.83",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_903840935.1",
                "gtdb_species": "s__Chlorobium sp903840935",
                "ani": 82.7602,
                "matched_fragments": 233,
                "total_fragments": 355,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.22",
                "min_intra_species_ani": "98.87",
                "mean_intra_species_af": "0.67",
                "min_intra_species_af": "0.63",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_903939765.1",
                "gtdb_species": "s__Chlorobium sp903939765",
                "ani": 82.5173,
                "matched_fragments": 270,
                "total_fragments": 355,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.90",
                "min_intra_species_ani": "99.86",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000020645.1",
                "gtdb_species": "s__Chlorobium phaeoclathratiforme",
                "ani": 81.8711,
                "matched_fragments": 269,
                "total_fragments": 355,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.203,
        "cell_length": 0.048,
        "doubling_h": 0.283,
        "growth_tmp": 27.653,
        "optimum_tmp": 31.393,
        "optimum_ph": 5.975,
        "genome_size": 2525906.989,
        "gc_content": 52.738,
        "coding_genes": 2296.574,
        "rRNA16S_genes": 1.888,
        "tRNA_genes": 47.944,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.3,
        "anaerobic_respiration": 0.7,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.888,
        "thermophilic_range_tmp": 0.111,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.888,
        "coccus_cell_shape": 0.111,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Chlorobiia",
        "o__Chlorobiales",
        "f__Chlorobiaceae",
        "g__Chlorobium",
        "s__Chlorobium sp903865705"
    ],
    "_genome_taxon": [
        "uncultured",
        "Chlorobiaceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Chlorobiia",
        "o__Chlorobiales",
        "f__Chlorobiaceae",
        "g__Chlorobium",
        "s__Chlorobium sp903865705",
        "Bacteria",
        "Bacteroidota",
        "Chlorobiia",
        "Chlorobiales",
        "Chlorobiaceae",
        "Chlorobium",
        "Chlorobium",
        "sp903865705"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}