{ "type": "genome", "identifier": "GCA_903834285.1", "organism": "uncultured Sphingomonadales bacterium", "title": "uncultured Sphingomonadales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903834285.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6951093", "wgs_master": "CAILIO000000000.1", "refseq_category": "na", "taxid": "293405", "species_taxid": "293405", "organism_name": "uncultured Sphingomonadales bacterium", "infraspecific_name": "", "isolate": "Ki1-0-7m_bin-0455", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/19", "asm_name": "freshwater MAG --- Ki1-0-7m_bin-0455", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/834/285/GCA_903834285.1_freshwater_MAG_---_Ki1-0-7m_bin-0455", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-19", "dateModified": "2020-07-19", "datePublished": "2020-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Sphingomonadales bacterium" ], "sample_taxid": [ "293405" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "1.143 MB", "sample_ph_range": { "min": 539.0, "max": 539.0 }, "sample_temperature_range": { "min": 20.0, "max": 20.0 }, "completeness": 94.91, "contamination": 8.33, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4099893", "Number of Sequences": "425", "Longest Sequences (bp)": "71721", "N50 (bp)": "15798", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.1", "Number of CDSs": "3521", "Average Protein Length": "311.5", "Coding Ratio (%)": "80.2", "Number of rRNAs": "0", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Novosphingobium fuchskuhlense", "strain": "strain=FNE08-7", "accession": "GCA_001519075.1", "taxid": 1117702, "species_taxid": 1117702, "relation_to_type": "type", "validated": true, "ani": 85.4861, "matched_fragments": 829, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium sediminis", "strain": "strain=NBRC 106119", "accession": "GCA_007991615.1", "taxid": 707214, "species_taxid": 707214, "relation_to_type": "type", "validated": true, "ani": 85.2356, "matched_fragments": 870, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium huizhouense", "strain": "strain=c7", "accession": "GCA_020179475.1", "taxid": 2866625, "species_taxid": 2866625, "relation_to_type": "type", "validated": true, "ani": 80.355, "matched_fragments": 543, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium percolationis", "strain": "strain=c1", "accession": "GCA_020179425.1", "taxid": 2871811, "species_taxid": 2871811, "relation_to_type": "type", "validated": true, "ani": 80.2798, "matched_fragments": 517, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium jiangmenense", "strain": "strain=1Y9A", "accession": "GCA_015694345.1", "taxid": 2791981, "species_taxid": 2791981, "relation_to_type": "type", "validated": true, "ani": 79.9518, "matched_fragments": 483, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium olei", "strain": "strain=TW-4", "accession": "GCA_012927405.1", "taxid": 2728851, "species_taxid": 2728851, "relation_to_type": "type", "validated": true, "ani": 79.7468, "matched_fragments": 518, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium aromaticivorans", "strain": "strain=DSM 12444", "accession": "GCA_000013325.1", "taxid": 48935, "species_taxid": 48935, "relation_to_type": "type", "validated": true, "ani": 79.5709, "matched_fragments": 449, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium lentum", "strain": "strain=NBRC 107847", "accession": "GCA_001590965.1", "taxid": 145287, "species_taxid": 145287, "relation_to_type": "type", "validated": true, "ani": 79.4455, "matched_fragments": 466, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium hassiacum", "strain": "strain=DSM 14552", "accession": "GCA_014196055.1", "taxid": 173676, "species_taxid": 173676, "relation_to_type": "type", "validated": true, "ani": 79.3936, "matched_fragments": 415, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium subterraneum", "strain": "strain=DSM 12447", "accession": "GCA_000807925.1", "taxid": 48936, "species_taxid": 48936, "relation_to_type": "type", "validated": true, "ani": 79.3288, "matched_fragments": 444, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium flavum", "strain": "strain=NBRC 111647", "accession": "GCA_014230315.1", "taxid": 1778672, "species_taxid": 1778672, "relation_to_type": "type", "validated": true, "ani": 78.7214, "matched_fragments": 368, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium silvae", "strain": "strain=FGD1", "accession": "GCA_009856825.1", "taxid": 2692619, "species_taxid": 2692619, "relation_to_type": "type", "validated": true, "ani": 78.0528, "matched_fragments": 282, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter aerophilus", "strain": "strain=Ery1", "accession": "GCA_003581645.1", "taxid": 2306995, "species_taxid": 2306995, "relation_to_type": "type", "validated": true, "ani": 77.8689, "matched_fragments": 294, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania proteolytica", "strain": "strain=6B39", "accession": "GCA_019711565.1", "taxid": 2867239, "species_taxid": 2867239, "relation_to_type": "type", "validated": true, "ani": 77.8636, "matched_fragments": 277, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania qiaonensis", "strain": "strain=6D47A", "accession": "GCA_019711515.1", "taxid": 2867240, "species_taxid": 2867240, "relation_to_type": "type", "validated": true, "ani": 77.491, "matched_fragments": 192, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium umbonatum", "strain": "strain=FSY-9", "accession": "GCA_004005905.1", "taxid": 1908524, "species_taxid": 1908524, "relation_to_type": "type", "validated": true, "ani": 77.3542, "matched_fragments": 223, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 94.91, "contamination": 8.33, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_903834285.1", "gtdb_species": "s__Novosphingobium sp903834285", "ani": 100.0, "matched_fragments": 1116, "total_fragments": 1139, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Novosphingobium", "ani_circumscription_radius": 95.0, 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003454795.1", "gtdb_species": "s__Novosphingobium sp003454795", "ani": 79.6505, "matched_fragments": 465, "total_fragments": 1139, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Novosphingobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.02", "min_intra_species_ani": "97.88", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001590965.1", "gtdb_species": "s__Novosphingobium lentum", "ani": 79.4501, "matched_fragments": 465, "total_fragments": 1139, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Novosphingobium", 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"Novosphingobium", "sp903834285" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }