{ "type": "genome", "identifier": "GCA_903834635.1", "organism": "uncultured Micrococcales bacterium", "title": "uncultured Micrococcales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903834635.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6954250", "wgs_master": "CAILJO000000000.1", "refseq_category": "na", "taxid": "1920814", "species_taxid": "1920814", "organism_name": "uncultured Micrococcales bacterium", "infraspecific_name": "", "isolate": "A14_bin-3063", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/17", "asm_name": "freshwater MAG --- A14_bin-3063", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/834/635/GCA_903834635.1_freshwater_MAG_---_A14_bin-3063", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-17", "dateModified": "2020-07-17", "datePublished": "2020-07-17", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Micrococcales bacterium" ], "sample_taxid": [ "1920814" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada" ], "sample_host_location_id": [], "data_size": "0.428 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 14.87, "strain_heterogeneity": 66.67, "genome_count": 1 }, "data_type": 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"total_fragments": 418, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoluna limnophila", "strain": "strain=27D-LEPI", "accession": "GCA_005845365.1", "taxid": 232537, "species_taxid": 232537, "relation_to_type": "type", "validated": true, "ani": 77.5083, "matched_fragments": 78, "total_fragments": 418, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.54, "contamination": 14.87, "strain_heterogeneity": 66.67 }, "gtdb_result": [ { "accession": "GCA_903834635.1", "gtdb_species": "s__Rhodoluna sp903834635", "ani": 100.0, "matched_fragments": 414, "total_fragments": 418, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Rhodoluna", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.34", "min_intra_species_ani": "99.27", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "conclusive" }, { 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"coccobacillus_cell_shape": 0.059, "vibrio_cell_shape": 0.005, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Actinomycetes", "o__Actinomycetales", "f__Microbacteriaceae", "g__Rhodoluna", "s__Rhodoluna sp903834635" ], "_genome_taxon": [ "uncultured", "Micrococcales", "bacterium", "d__Bacteria", "p__Actinomycetota", "c__Actinomycetes", "o__Actinomycetales", "f__Microbacteriaceae", "g__Rhodoluna", "s__Rhodoluna sp903834635", "Bacteria", "Actinomycetota", "Actinomycetes", "Actinomycetales", "Microbacteriaceae", "Rhodoluna", "Rhodoluna", "sp903834635" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000027", "label": "pond" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }