{
    "type": "genome",
    "identifier": "GCA_903835015.1",
    "organism": "uncultured delta proteobacterium",
    "title": "uncultured delta proteobacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "BILS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_903835015.1",
        "bioproject": "PRJEB38681",
        "biosample": "SAMEA6955241",
        "wgs_master": "CAILLJ000000000.1",
        "refseq_category": "na",
        "taxid": "34034",
        "species_taxid": "34034",
        "organism_name": "uncultured delta proteobacterium",
        "infraspecific_name": "",
        "isolate": "AM_bin-4438",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/20",
        "asm_name": "freshwater MAG --- AM_bin-4438",
        "submitter": "BILS",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/835/015/GCA_903835015.1_freshwater_MAG_---_AM_bin-4438",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-20",
    "dateModified": "2020-07-20",
    "datePublished": "2020-07-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured delta proteobacterium"
        ],
        "sample_taxid": [
            "34034"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Finland"
        ],
        "sample_host_location_id": [],
        "data_size": "1.563 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.62,
        "contamination": 1.52,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "5437321",
        "Number of Sequences": "286",
        "Longest Sequences (bp)": "129977",
        "N50 (bp)": "44685",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "51.0",
        "Number of CDSs": "4742",
        "Average Protein Length": "318.9",
        "Coding Ratio (%)": "83.4",
        "Number of rRNAs": "2",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Desulfoprunum benzoelyticum",
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                "accession": "GCA_014201505.1",
                "taxid": 1506996,
                "species_taxid": 1506996,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 154,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfoprunum benzoelyticum",
                "strain": "strain=DSM 28570",
                "accession": "GCA_016918515.1",
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                "species_taxid": 1506996,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulforhopalus vacuolatus",
                "strain": "strain=DSM 9700",
                "accession": "GCA_016918505.1",
                "taxid": 40414,
                "species_taxid": 40414,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1612,
                "matched_fragments": 56,
                "total_fragments": 1656,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfofustis glycolicus",
                "strain": "strain=DSM 9705",
                "accession": "GCA_900130015.1",
                "taxid": 51195,
                "species_taxid": 51195,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0854,
                "matched_fragments": 99,
                "total_fragments": 1656,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfopila aestuarii",
                "strain": "strain=DSM 18488",
                "accession": "GCA_900143695.1",
                "taxid": 231440,
                "species_taxid": 231440,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0207,
                "matched_fragments": 112,
                "total_fragments": 1656,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.62,
            "contamination": 1.52,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_903875445.1",
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                "total_fragments": 1656,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfocapsaceae;g__Desulforhopalus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.93",
                "min_intra_species_ani": "99.88",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCA_011391225.1",
                "gtdb_species": "s__Desulforhopalus sp011391225",
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                "matched_fragments": 560,
                "total_fragments": 1656,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfocapsaceae;g__Desulforhopalus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018821785.1",
                "gtdb_species": "s__Desulforhopalus sp018821785",
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                "matched_fragments": 798,
                "total_fragments": 1656,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfocapsaceae;g__Desulforhopalus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000961725.1",
                "gtdb_species": "s__Desulforhopalus sp000961725",
                "ani": 78.4399,
                "matched_fragments": 438,
                "total_fragments": 1656,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfocapsaceae;g__Desulforhopalus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001799365.1",
                "gtdb_species": "s__Desulforhopalus sp001799365",
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                "total_fragments": 1656,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfocapsaceae;g__Desulforhopalus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903901335.1",
                "gtdb_species": "s__CAIUQR01 sp903901335",
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                "matched_fragments": 192,
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfocapsaceae;g__CAIUQR01",
                "ani_circumscription_radius": 95.0,
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                "mean_intra_species_af": "0.92",
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                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_000769715.1",
                "gtdb_species": "s__Desulfoprunum sp000769715",
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                "matched_fragments": 178,
                "total_fragments": 1656,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfocapsaceae;g__Desulfoprunum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.79",
                "min_intra_species_ani": "99.74",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_014201505.1",
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                "matched_fragments": 154,
                "total_fragments": 1656,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfocapsaceae;g__Desulfoprunum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_016918505.1",
                "gtdb_species": "s__Desulforhopalus vacuolatus",
                "ani": 76.1613,
                "matched_fragments": 56,
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__Desulfobulbia",
        "o__Desulfobulbales",
        "f__Desulfocapsaceae",
        "g__Desulforhopalus",
        "s__Desulforhopalus sp903875445"
    ],
    "_genome_taxon": [
        "uncultured",
        "delta",
        "proteobacterium",
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__Desulfobulbia",
        "o__Desulfobulbales",
        "f__Desulfocapsaceae",
        "g__Desulforhopalus",
        "s__Desulforhopalus sp903875445",
        "Bacteria",
        "Desulfobacterota",
        "Desulfobulbia",
        "Desulfobulbales",
        "Desulfocapsaceae",
        "Desulforhopalus",
        "Desulforhopalus",
        "sp903875445"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}