{ "type": "genome", "identifier": "GCA_903835515.1", "organism": "uncultured Chlorobiaceae bacterium", "title": "uncultured Chlorobiaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903835515.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6943799", "wgs_master": "CAILNH000000000.1", "refseq_category": "na", "taxid": "243904", "species_taxid": "243904", "organism_name": "uncultured Chlorobiaceae bacterium", "infraspecific_name": "", "isolate": "Ki2-D4_bin-0122", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/18", "asm_name": "freshwater MAG --- Ki2-D4_bin-0122", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/835/515/GCA_903835515.1_freshwater_MAG_---_Ki2-D4_bin-0122", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-18", "dateModified": "2020-07-18", "datePublished": "2020-07-18", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Chlorobiaceae bacterium" ], "sample_taxid": [ "243904" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "0.827 MB", "sample_ph_range": { "min": 606.0, "max": 606.0 }, "sample_temperature_range": { "min": 5.0, "max": 5.0 }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2895599", "Number of Sequences": "62", "Longest Sequences (bp)": "245165", "N50 (bp)": "119988", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "48.8", "Number of CDSs": "2595", "Average Protein Length": "316.8", "Coding Ratio (%)": "85.2", "Number of rRNAs": "0", "Number of tRNAs": "42", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pelodictyon phaeoclathratiforme", "strain": "strain=BU-1", "accession": "GCA_000020645.1", "taxid": 34090, "species_taxid": 34090, "relation_to_type": "type", "validated": true, "ani": 82.9941, "matched_fragments": 590, "total_fragments": 934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chlorobium ferrooxidans", "strain": "strain=DSM 13031", "accession": "GCA_000168715.1", "taxid": 84205, "species_taxid": 84205, "relation_to_type": "type", "validated": true, "ani": 78.7531, "matched_fragments": 317, "total_fragments": 934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chlorobium phaeobacteroides", "strain": "strain=DSM 266", "accession": "GCA_000015125.1", "taxid": 1096, "species_taxid": 1096, "relation_to_type": "type", "validated": true, "ani": 78.2285, "matched_fragments": 176, "total_fragments": 934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chlorobium limicola", "strain": "strain=DSM 245", "accession": "GCA_000020465.1", "taxid": 1092, "species_taxid": 1092, "relation_to_type": "type", "validated": true, "ani": 77.0771, "matched_fragments": 167, "total_fragments": 934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelodictyon luteolum", "strain": "strain=DSM 273", "accession": "GCA_000012485.1", "taxid": 1100, "species_taxid": 1100, "relation_to_type": "type", "validated": true, "ani": 76.9018, "matched_fragments": 105, "total_fragments": 934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chlorobaculum tepidum", "strain": "strain=TLS", "accession": "GCA_000006985.1", "taxid": 1097, "species_taxid": 1097, "relation_to_type": "type", "validated": true, "ani": 76.5797, "matched_fragments": 77, "total_fragments": 934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chlorobaculum limnaeum", "strain": "strain=DSM 1677", "accession": "GCA_001747405.1", "taxid": 274537, "species_taxid": 274537, "relation_to_type": "type", "validated": true, "ani": 76.361, "matched_fragments": 86, "total_fragments": 934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chlorobaculum thiosulfatiphilum", "strain": "strain=DSM 249", "accession": "GCA_006265165.1", "taxid": 115852, "species_taxid": 115852, "relation_to_type": "type", "validated": true, "ani": 76.334, "matched_fragments": 88, "total_fragments": 934, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, 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