{ "type": "genome", "identifier": "GCA_903835635.1", "organism": "uncultured Burkholderiales bacterium", "title": "uncultured Burkholderiales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903835635.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6944407", "wgs_master": "CAILNU000000000.1", "refseq_category": "na", "taxid": "208544", "species_taxid": "208544", "organism_name": "uncultured Burkholderiales bacterium", "infraspecific_name": "", "isolate": "Umea2p3_bin-1036", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/17", "asm_name": "freshwater MAG --- Umea2p3_bin-1036", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/835/635/GCA_903835635.1_freshwater_MAG_---_Umea2p3_bin-1036", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-17", "dateModified": "2020-07-17", "datePublished": "2020-07-17", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Burkholderiales bacterium" ], "sample_taxid": [ "208544" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "0.431 MB", "sample_ph_range": { "min": 556.0, "max": 556.0 }, "sample_temperature_range": { "min": 69.0, "max": 69.0 }, "completeness": 65.74, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1522613", "Number of Sequences": "39", "Longest Sequences (bp)": "138737", "N50 (bp)": "58182", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.3", "Number of CDSs": "1371", "Average Protein Length": "319.7", "Coding Ratio (%)": "86.3", "Number of rRNAs": "1", "Number of tRNAs": "24", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Limnohabitans parvus", "strain": "strain=II-B4", "accession": "GCA_003063455.1", "taxid": 540061, "species_taxid": 540061, "relation_to_type": "type", "validated": true, "ani": 77.0978, "matched_fragments": 81, "total_fragments": 487, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans radicicola", "strain": "strain=JUR4", "accession": "GCA_014837235.1", "taxid": 2771427, "species_taxid": 2771427, "relation_to_type": "type", "validated": true, "ani": 77.0394, "matched_fragments": 77, "total_fragments": 487, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans planktonicus", "strain": "strain=II-D5", "accession": "GCA_001270065.2", "taxid": 540060, "species_taxid": 540060, "relation_to_type": "type", "validated": true, "ani": 77.0247, "matched_fragments": 89, "total_fragments": 487, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga taeniospiralis", "strain": "strain=NBRC 102512", "accession": "GCA_001592305.1", "taxid": 65656, "species_taxid": 65656, "relation_to_type": "type", "validated": true, "ani": 76.6036, "matched_fragments": 61, "total_fragments": 487, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax saidenbachensis", "strain": "strain=ED16", "accession": "GCA_000498435.1", "taxid": 1484693, "species_taxid": 1484693, "relation_to_type": "type", "validated": true, "ani": 76.5253, "matched_fragments": 52, "total_fragments": 487, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga pseudoflava", "strain": "strain=NBRC 102511", "accession": "GCA_001592285.1", "taxid": 47421, "species_taxid": 47421, "relation_to_type": "type", "validated": true, "ani": 76.4854, "matched_fragments": 63, "total_fragments": 487, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira metamorpha", "strain": "strain=NBRC 13960", "accession": "GCA_003568725.1", "taxid": 80881, "species_taxid": 80881, "relation_to_type": "type", "validated": true, "ani": 76.4737, "matched_fragments": 67, "total_fragments": 487, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax saidenbachensis", "strain": "strain=DSM 22694", "accession": "GCA_001955715.1", "taxid": 1484693, "species_taxid": 1484693, "relation_to_type": "type", "validated": true, "ani": 76.457, "matched_fragments": 55, "total_fragments": 487, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira metamorpha", "strain": "strain=DSM 1837", "accession": "GCA_004341365.1", "taxid": 80881, "species_taxid": 80881, "relation_to_type": "type", "validated": true, "ani": 76.4469, "matched_fragments": 69, "total_fragments": 487, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax lacus", "strain": "strain=IMCC26218", "accession": "GCA_003415675.1", "taxid": 2184758, "species_taxid": 2184758, "relation_to_type": "type", "validated": true, "ani": 76.4118, "matched_fragments": 66, "total_fragments": 487, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curvibacter gracilis", "strain": "strain=ATCC BAA-807", "accession": "GCA_000518645.1", "taxid": 230310, "species_taxid": 230310, "relation_to_type": "type", "validated": true, "ani": 76.2234, "matched_fragments": 68, "total_fragments": 487, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curvibacter lanceolatus", "strain": "strain=ATCC 14669", "accession": "GCA_000381265.1", "taxid": 86182, "species_taxid": 86182, "relation_to_type": "type", "validated": true, "ani": 76.187, "matched_fragments": 79, "total_fragments": 487, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tepidicella baoligensis", "strain": "strain=B18-50", "accession": "GCA_013432195.1", "taxid": 2707016, "species_taxid": 2707016, "relation_to_type": "type", "validated": true, "ani": 76.1163, "matched_fragments": 51, "total_fragments": 487, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella paludis", "strain": "strain=KCTC 32238", "accession": "GCA_018069865.1", "taxid": 1233411, "species_taxid": 1233411, "relation_to_type": "type", "validated": true, "ani": 76.0691, "matched_fragments": 51, "total_fragments": 487, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax bucti", "strain": "strain=GSA243-2", "accession": "GCA_005876985.1", "taxid": 2576305, "species_taxid": 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