{ "type": "genome", "identifier": "GCA_903839205.1", "organism": "uncultured Holophagaceae bacterium", "title": "uncultured Holophagaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903839205.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6951023", "wgs_master": "CAIMBM000000000.1", "refseq_category": "na", "taxid": "904990", "species_taxid": "904990", "organism_name": "uncultured Holophagaceae bacterium", "infraspecific_name": "", "isolate": "AM-2014-D4_bin-538", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/19", "asm_name": "freshwater MAG --- AM-2014-D4_bin-538", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/839/205/GCA_903839205.1_freshwater_MAG_---_AM-2014-D4_bin-538", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-19", "dateModified": "2020-07-19", "datePublished": "2020-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Holophagaceae bacterium" ], "sample_taxid": [ "904990" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "0.849 MB", "sample_ph_range": { "min": 475.0, "max": 475.0 }, "sample_temperature_range": { "min": 61.0, "max": 61.0 }, "completeness": 59.38, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, 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"total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter tataouinensis", "strain": "strain=TTB310", "accession": "GCA_000215705.1", "taxid": 94132, "species_taxid": 94132, "relation_to_type": "type", "validated": true, "ani": 75.3633, "matched_fragments": 74, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaeromyxobacter dehalogenans", "strain": "strain=2CP-1", "accession": "GCA_000022145.1", "taxid": 161493, "species_taxid": 161493, "relation_to_type": "type", "validated": true, "ani": 75.2451, "matched_fragments": 72, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis exhalans", "strain": "strain=JCM11759T", "accession": "GCA_024134545.1", "taxid": 163604, "species_taxid": 163604, "relation_to_type": "type", "validated": true, "ani": 74.6057, "matched_fragments": 52, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbidospora galbida", "strain": "strain=NEAU-GS14", "accession": "GCA_005233835.1", "taxid": 2575442, "species_taxid": 2575442, "relation_to_type": "type", "validated": true, "ani": 74.6025, "matched_fragments": 56, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 59.38, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903839205.1", "gtdb_species": "s__Geothrix sp903839205", "ani": 100.0, "matched_fragments": 867, "total_fragments": 880, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Holophagae;o__Holophagales;f__Holophagaceae;g__Geothrix", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_003158505.1", "gtdb_species": "s__Geothrix sp003158505", "ani": 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"freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }