{ "type": "genome", "identifier": "GCA_903839405.1", "organism": "uncultured Chlorobiaceae bacterium", "title": "uncultured Chlorobiaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903839405.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6953759", "wgs_master": "CAIMCD000000000.1", "refseq_category": "na", "taxid": "243904", "species_taxid": "243904", "organism_name": "uncultured Chlorobiaceae bacterium", "infraspecific_name": "", "isolate": "MJ-time_bin-8753", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/18", "asm_name": "freshwater MAG --- MJ-time_bin-8753", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/839/405/GCA_903839405.1_freshwater_MAG_---_MJ-time_bin-8753", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-18", "dateModified": "2020-07-18", "datePublished": "2020-07-18", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Chlorobiaceae bacterium" ], "sample_taxid": [ "243904" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "0.733 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.3, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2566959", "Number of Sequences": "46", "Longest Sequences (bp)": "229866", "N50 (bp)": "88790", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "51.2", "Number of CDSs": "2228", "Average Protein Length": "325.4", "Coding Ratio (%)": "84.7", "Number of rRNAs": "1", "Number of tRNAs": "46", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chlorobium ferrooxidans", "strain": "strain=DSM 13031", "accession": "GCA_000168715.1", "taxid": 84205, "species_taxid": 84205, "relation_to_type": "type", "validated": true, "ani": 78.8996, "matched_fragments": 326, "total_fragments": 834, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelodictyon phaeoclathratiforme", "strain": "strain=BU-1", "accession": "GCA_000020645.1", "taxid": 34090, "species_taxid": 34090, "relation_to_type": "type", "validated": true, "ani": 78.8924, "matched_fragments": 355, "total_fragments": 834, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chlorobium limicola", "strain": "strain=DSM 245", "accession": "GCA_000020465.1", "taxid": 1092, "species_taxid": 1092, "relation_to_type": "type", "validated": true, "ani": 77.3762, "matched_fragments": 167, "total_fragments": 834, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chlorobium phaeobacteroides", "strain": "strain=DSM 266", "accession": "GCA_000015125.1", "taxid": 1096, "species_taxid": 1096, "relation_to_type": "type", "validated": true, "ani": 77.3043, "matched_fragments": 162, "total_fragments": 834, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelodictyon luteolum", "strain": "strain=DSM 273", "accession": "GCA_000012485.1", "taxid": 1100, "species_taxid": 1100, "relation_to_type": "type", "validated": true, "ani": 77.0303, "matched_fragments": 137, "total_fragments": 834, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chlorobaculum limnaeum", "strain": "strain=DSM 1677", "accession": "GCA_001747405.1", "taxid": 274537, "species_taxid": 274537, "relation_to_type": "type", "validated": true, "ani": 76.7651, "matched_fragments": 120, "total_fragments": 834, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chlorobaculum thiosulfatiphilum", "strain": "strain=DSM 249", "accession": "GCA_006265165.1", "taxid": 115852, "species_taxid": 115852, "relation_to_type": "type", "validated": true, "ani": 76.6254, "matched_fragments": 125, "total_fragments": 834, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prosthecochloris vibrioformis", "strain": "strain=DSM 260", "accession": "GCA_006265245.1", "taxid": 1098, "species_taxid": 1098, "relation_to_type": "type", "validated": true, "ani": 76.5347, "matched_fragments": 54, "total_fragments": 834, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prosthecochloris aestuarii", "strain": "strain=DSM 271", "accession": "GCA_000020625.1", "taxid": 1102, "species_taxid": 1102, "relation_to_type": "type", "validated": true, "ani": 76.1782, "matched_fragments": 67, "total_fragments": 834, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 97.3, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903839405.1", "gtdb_species": "s__Chlorobium sp903839405", "ani": 100.0, "matched_fragments": 831, "total_fragments": 834, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_005843805.1", "gtdb_species": "s__Chlorobium sp005843805", "ani": 79.2709, "matched_fragments": 328, "total_fragments": 834, 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