{
    "type": "genome",
    "identifier": "GCA_903841165.1",
    "organism": "uncultured proteobacterium",
    "title": "uncultured proteobacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "BILS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_903841165.1",
        "bioproject": "PRJEB38681",
        "biosample": "SAMEA6946028",
        "wgs_master": "CAIMIR000000000.1",
        "refseq_category": "na",
        "taxid": "153809",
        "species_taxid": "153809",
        "organism_name": "uncultured proteobacterium",
        "infraspecific_name": "",
        "isolate": "I3_bin-011",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/18",
        "asm_name": "freshwater MAG --- I3_bin-011",
        "submitter": "BILS",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/841/165/GCA_903841165.1_freshwater_MAG_---_I3_bin-011",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-18",
    "dateModified": "2020-07-18",
    "datePublished": "2020-07-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured proteobacterium"
        ],
        "sample_taxid": [
            "153809"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada"
        ],
        "sample_host_location_id": [],
        "data_size": "0.817 MB",
        "sample_ph_range": {
            "min": 475.0,
            "max": 475.0
        },
        "sample_temperature_range": {
            "min": 113.0,
            "max": 113.0
        },
        "completeness": 98.15,
        "contamination": 4.63,
        "strain_heterogeneity": 50.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2851429",
        "Number of Sequences": "595",
        "Longest Sequences (bp)": "36479",
        "N50 (bp)": "5961",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "55.1",
        "Number of CDSs": "2421",
        "Average Protein Length": "277.7",
        "Coding Ratio (%)": "70.7",
        "Number of rRNAs": "1",
        "Number of tRNAs": "36",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Azospirillum ramasamyi",
                "strain": "strain=M2T2B2",
                "accession": "GCA_003233655.1",
                "taxid": 682998,
                "species_taxid": 682998,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.978,
                "matched_fragments": 50,
                "total_fragments": 615,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azospirillum humicireducens",
                "strain": "strain=SgZ-5",
                "accession": "GCA_001639105.2",
                "taxid": 1226968,
                "species_taxid": 1226968,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8859,
                "matched_fragments": 53,
                "total_fragments": 615,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azospirillum palustre",
                "strain": "strain=B2",
                "accession": "GCA_002573965.1",
                "taxid": 2044885,
                "species_taxid": 2044885,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8825,
                "matched_fragments": 56,
                "total_fragments": 615,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azospirillum thermophilum",
                "strain": "strain=CFH 70021",
                "accession": "GCA_003130795.1",
                "taxid": 2202148,
                "species_taxid": 2202148,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6927,
                "matched_fragments": 53,
                "total_fragments": 615,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azospirillum picis",
                "strain": "strain=IMMIB TAR-3",
                "accession": "GCA_017876115.1",
                "taxid": 488438,
                "species_taxid": 488438,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5987,
                "matched_fragments": 53,
                "total_fragments": 615,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 98.15,
            "contamination": 4.63,
            "strain_heterogeneity": 50.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_903875345.1",
                "gtdb_species": "s__CAIQVS01 sp903875345",
                "ani": 99.5789,
                "matched_fragments": 558,
                "total_fragments": 615,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__UBA9219;f__UBA9219;g__CAIQVS01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.58",
                "min_intra_species_ani": "99.58",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_903919315.1",
                "gtdb_species": "s__CAIXHP01 sp903919315",
                "ani": 81.0025,
                "matched_fragments": 126,
                "total_fragments": 615,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__UBA9219;f__UBA9219;g__CAIXHP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.93",
                "min_intra_species_ani": "99.88",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_903920205.1",
                "gtdb_species": "s__CAIXLI01 sp903920205",
                "ani": 77.3279,
                "matched_fragments": 69,
                "total_fragments": 615,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__UBA9219;f__UBA9219;g__CAIXLI01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015654915.1",
                "gtdb_species": "s__JAATFY01 sp015654915",
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                "matched_fragments": 95,
                "total_fragments": 615,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__UBA9219;f__UBA9219;g__JAATFY01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019233975.1",
                "gtdb_species": "s__JAFALY01 sp019233975",
                "ani": 76.5993,
                "matched_fragments": 67,
                "total_fragments": 615,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__UBA9219;f__UBA9219;g__JAFALY01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.74",
                "min_intra_species_ani": "99.74",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_017876095.1",
                "gtdb_species": "s__Azospirillum agricola",
                "ani": 75.8678,
                "matched_fragments": 50,
                "total_fragments": 615,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Azospirillales;f__Azospirillaceae;g__Azospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.88",
                "min_intra_species_ani": "96.88",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__UBA9219",
        "f__UBA9219",
        "g__CAIQVS01",
        "s__CAIQVS01 sp903875345"
    ],
    "_genome_taxon": [
        "uncultured",
        "proteobacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__UBA9219",
        "f__UBA9219",
        "g__CAIQVS01",
        "s__CAIQVS01 sp903875345",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "UBA9219",
        "UBA9219",
        "CAIQVS01",
        "CAIQVS01",
        "sp903875345"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000027",
            "label": "pond"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}