{ "type": "genome", "identifier": "GCA_903841375.1", "organism": "uncultured beta proteobacterium", "title": "uncultured beta proteobacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903841375.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6948702", "wgs_master": "CAIMJG000000000.1", "refseq_category": "na", "taxid": "86027", "species_taxid": "86027", "organism_name": "uncultured beta proteobacterium", "infraspecific_name": "", "isolate": "MJ130916A_bin-0890", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/19", "asm_name": "freshwater MAG --- MJ130916A_bin-0890", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/841/375/GCA_903841375.1_freshwater_MAG_---_MJ130916A_bin-0890", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-19", "dateModified": "2020-07-19", "datePublished": "2020-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured beta proteobacterium" ], "sample_taxid": [ "86027" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "0.932 MB", "sample_ph_range": { "min": 601.0, "max": 601.0 }, "sample_temperature_range": { "min": 673.0, "max": 673.0 }, "completeness": 74.41, "contamination": 7.23, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3285542", "Number of Sequences": "1034", "Longest Sequences (bp)": "16650", "N50 (bp)": "3410", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.8", "Number of CDSs": "2254", "Average Protein Length": "271.9", "Coding Ratio (%)": "56.0", "Number of rRNAs": "1", "Number of tRNAs": "19", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodocyclus tenuis", "strain": "strain=2761", "accession": "GCA_009469755.1", "taxid": 1066, "species_taxid": 1066, "relation_to_type": "type", "validated": true, "ani": 78.6891, "matched_fragments": 143, "total_fragments": 499, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodocyclus tenuis", "strain": "strain=2761", "accession": "GCA_014197755.1", "taxid": 1066, "species_taxid": 1066, "relation_to_type": "type", "validated": true, "ani": 78.6507, "matched_fragments": 145, "total_fragments": 499, 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