{ "type": "genome", "identifier": "GCA_903842575.1", "organism": "uncultured Bacteroidetes bacterium", "title": "uncultured Bacteroidetes bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903842575.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6954353", "wgs_master": "CAIMMM000000000.1", "refseq_category": "na", "taxid": "152509", "species_taxid": "152509", "organism_name": "uncultured Bacteroidetes bacterium", "infraspecific_name": "", "isolate": "KTt_bin-1219", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/18", "asm_name": "freshwater MAG --- KTt_bin-1219", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/842/575/GCA_903842575.1_freshwater_MAG_---_KTt_bin-1219", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-18", "dateModified": "2020-07-18", "datePublished": "2020-07-18", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Bacteroidetes bacterium" ], "sample_taxid": [ "152509" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "0.750 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 76.39, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2666741", "Number of Sequences": "178", "Longest Sequences (bp)": "212586", "N50 (bp)": "41654", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.9", "Number of CDSs": "2230", "Average Protein Length": "336.5", "Coding Ratio (%)": "84.4", "Number of rRNAs": "1", "Number of tRNAs": "29", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium sangjuense", "strain": "strain=GS03", "accession": "GCA_004797125.1", "taxid": 2518177, "species_taxid": 2518177, "relation_to_type": "type", "validated": true, "ani": 78.3283, "matched_fragments": 377, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium dankookense", "strain": "strain=DSM 25687", "accession": "GCA_004362665.1", "taxid": 706186, "species_taxid": 706186, "relation_to_type": "type", "validated": true, "ani": 78.2197, "matched_fragments": 324, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium solisilvae", "strain": "strain=SE-s27", "accession": "GCA_012911605.1", "taxid": 1852019, "species_taxid": 1852019, "relation_to_type": "type", "validated": true, "ani": 78.1867, "matched_fragments": 318, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium luteum", "strain": "strain=NBRC 112527", "accession": "GCA_008806775.1", "taxid": 2026654, "species_taxid": 2026654, "relation_to_type": "type", "validated": true, "ani": 78.0392, "matched_fragments": 266, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium macrobrachii", "strain": "strain=LMG 25203", "accession": "GCA_014385475.2", "taxid": 591204, "species_taxid": 591204, "relation_to_type": "type", "validated": true, "ani": 77.9939, "matched_fragments": 316, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium macrobrachii", "strain": "strain=an-8", "accession": "GCA_014486675.1", "taxid": 591204, "species_taxid": 591204, "relation_to_type": "type", "validated": true, "ani": 77.9834, "matched_fragments": 316, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium swingsii", "strain": "strain=DSM 21789", "accession": "GCA_900111965.1", "taxid": 498292, "species_taxid": 498292, "relation_to_type": "type", "validated": true, "ani": 77.9749, "matched_fragments": 231, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium alvei", "strain": "strain=HR-AY", "accession": "GCA_002920895.1", "taxid": 2080416, "species_taxid": 2080416, "relation_to_type": "type", "validated": true, "ani": 77.77, "matched_fragments": 252, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychrotolerans", "strain": "strain=RB1R5", "accession": "GCA_003097635.1", "taxid": 2169410, "species_taxid": 2169410, "relation_to_type": "type", "validated": true, "ani": 77.7151, "matched_fragments": 233, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gawalongense", "strain": "strain=GSP16", "accession": "GCA_007097265.1", "taxid": 2594432, "species_taxid": 2594432, "relation_to_type": "type", "validated": true, "ani": 77.7098, "matched_fragments": 243, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium ranwuense", "strain": "strain=LB2P22", "accession": "GCA_004349315.1", "taxid": 2541725, "species_taxid": 2541725, "relation_to_type": "type", "validated": true, "ani": 77.7005, "matched_fragments": 234, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium nackdongense", "strain": "strain=GS13", "accession": "GCA_004355225.1", "taxid": 2547394, "species_taxid": 2547394, "relation_to_type": "type", "validated": true, "ani": 77.6835, "matched_fragments": 220, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium xueshanense", "strain": "strain=CGMCC 1.9227", "accession": "GCA_900112975.1", "taxid": 935223, "species_taxid": 935223, "relation_to_type": "type", "validated": true, "ani": 77.6524, "matched_fragments": 222, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium glaciei", "strain": "strain=DSM 19728", "accession": "GCA_003350545.1", "taxid": 386300, "species_taxid": 386300, "relation_to_type": "type", "validated": true, "ani": 77.5599, "matched_fragments": 225, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium laiguense", "strain": "strain=LB2P30", "accession": "GCA_003097655.1", "taxid": 2169409, "species_taxid": 2169409, "relation_to_type": "type", "validated": true, "ani": 77.5431, "matched_fragments": 226, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium glaciei", "strain": "strain=CGMCC 1.5380", "accession": "GCA_007994155.1", "taxid": 386300, "species_taxid": 386300, "relation_to_type": "type", "validated": true, "ani": 77.5275, "matched_fragments": 222, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium geliluteum", "strain": "strain=P7388", "accession": "GCA_017948595.1", "taxid": 2816120, "species_taxid": 2816120, "relation_to_type": "type", "validated": true, "ani": 77.2187, "matched_fragments": 184, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium araucananum", "strain": "strain=DSM 24704", "accession": "GCA_002222055.1", "taxid": 946678, "species_taxid": 946678, "relation_to_type": "type", "validated": true, "ani": 77.1936, "matched_fragments": 197, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium amnicola", "strain": "strain=LLJ-11", "accession": "GCA_004122165.1", "taxid": 2506422, "species_taxid": 2506422, "relation_to_type": "type", "validated": true, "ani": 77.1826, "matched_fragments": 192, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 77.1098, "matched_fragments": 175, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 77.0867, "matched_fragments": 180, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium silvisoli", "strain": "strain=RD-2-33", "accession": "GCA_004329815.1", "taxid": 2529433, "species_taxid": 2529433, "relation_to_type": "type", "validated": true, "ani": 77.0752, "matched_fragments": 253, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cyclinae", "strain": "strain=KSM-R2A25", "accession": "GCA_021172145.1", "taxid": 2895947, "species_taxid": 2895947, "relation_to_type": "type", "validated": true, "ani": 77.004, "matched_fragments": 190, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 77.002, "matched_fragments": 185, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium pokkalii", "strain": "strain=L1I52", "accession": "GCA_014596575.1", "taxid": 1940408, "species_taxid": 1940408, "relation_to_type": "type", "validated": true, "ani": 76.9946, "matched_fragments": 172, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium taihuense", "strain": "strain=NAS39", "accession": "GCA_019351435.1", "taxid": 2857508, "species_taxid": 2857508, "relation_to_type": "type", "validated": true, "ani": 76.9755, "matched_fragments": 214, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium branchiophilum", "strain": "strain=DSM 24789", "accession": "GCA_006716585.1", "taxid": 55197, "species_taxid": 55197, "relation_to_type": "type", "validated": true, "ani": 76.9256, "matched_fragments": 146, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium daejeonense", "strain": "strain=DSM 17708", "accession": "GCA_000425425.1", "taxid": 350893, "species_taxid": 350893, "relation_to_type": "type", "validated": true, "ani": 76.9248, "matched_fragments": 173, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 76.39, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903842575.1", "gtdb_species": "s__Flavobacterium sp903842575", "ani": 100.0, "matched_fragments": 780, "total_fragments": 787, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_004797125.1", "gtdb_species": "s__Flavobacterium sangjuense", "ani": 78.3283, "matched_fragments": 377, "total_fragments": 787, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004362665.1", "gtdb_species": "s__Flavobacterium dankookense", "ani": 78.2091, "matched_fragments": 325, "total_fragments": 787, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012911605.1", "gtdb_species": "s__Flavobacterium sp012911605", "ani": 78.1982, "matched_fragments": 317, "total_fragments": 787, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013298525.1", "gtdb_species": "s__Flavobacterium sp013298525", "ani": 78.1033, "matched_fragments": 259, "total_fragments": 787, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008806775.1", "gtdb_species": "s__Flavobacterium luteum", "ani": 78.0259, "matched_fragments": 267, "total_fragments": 787, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014486675.1", "gtdb_species": "s__Flavobacterium macrobrachii", "ani": 77.9832, "matched_fragments": 316, "total_fragments": 787, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.85", "min_intra_species_ani": "97.73", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003634615.1", "gtdb_species": "s__Flavobacterium sp002482945", "ani": 77.9509, "matched_fragments": 335, "total_fragments": 787, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.37", "min_intra_species_ani": "98.37", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_001464475.1", "gtdb_species": "s__Flavobacterium sp001464475", "ani": 77.9446, "matched_fragments": 329, "total_fragments": 787, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003525665.1", "gtdb_species": "s__Flavobacterium sp003525665", "ani": 77.9376, "matched_fragments": 292, "total_fragments": 787, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007097365.1", "gtdb_species": "s__Flavobacterium franklandianum", "ani": 77.8018, "matched_fragments": 266, "total_fragments": 787, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.99", "min_intra_species_ani": "98.99", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_014379405.1", "gtdb_species": "s__Flavobacterium sp014379405", "ani": 77.7435, "matched_fragments": 209, "total_fragments": 787, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903839195.1", "gtdb_species": "s__Flavobacterium sp903839195", "ani": 77.7392, "matched_fragments": 233, "total_fragments": 787, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.63", "min_intra_species_ani": "96.46", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.82", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_014486695.1", "gtdb_species": "s__Flavobacterium buctense", "ani": 77.7279, "matched_fragments": 307, "total_fragments": 787, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003097635.1", "gtdb_species": "s__Flavobacterium psychrotolerans", "ani": 77.7133, "matched_fragments": 231, "total_fragments": 787, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903837025.1", "gtdb_species": "s__Flavobacterium sp903837025", "ani": 77.7024, "matched_fragments": 149, "total_fragments": 787, "gtdb_taxonomy": 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