{ "type": "genome", "identifier": "GCA_903844265.1", "organism": "uncultured Verrucomicrobiota bacterium", "title": "uncultured Verrucomicrobiota bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903844265.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6950560", "wgs_master": "CAIMTB000000000.1", "refseq_category": "na", "taxid": "156588", "species_taxid": "156588", "organism_name": "uncultured Verrucomicrobiota bacterium", "infraspecific_name": "", "isolate": "LJ-3-4m_bin-0163", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/20", "asm_name": "freshwater MAG --- LJ-3-4m_bin-0163", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/844/265/GCA_903844265.1_freshwater_MAG_---_LJ-3-4m_bin-0163", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-20", "dateModified": "2020-07-20", "datePublished": "2020-07-20", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Verrucomicrobiota bacterium" ], "sample_taxid": [ "156588" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "1.688 MB", "sample_ph_range": { "min": 674.0, "max": 674.0 }, "sample_temperature_range": { "min": 105.0, "max": 105.0 }, "completeness": 95.83, "contamination": 0.46, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "6012136", "Number of Sequences": "671", "Longest Sequences (bp)": "59134", "N50 (bp)": "14485", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.5", "Number of CDSs": "3948", "Average Protein Length": "384.7", "Coding Ratio (%)": "75.8", "Number of rRNAs": "0", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Limisphaera ngatamarikiensis", "strain": "strain=NGM72.4", "accession": "GCA_011044775.1", "taxid": 1324935, "species_taxid": 1324935, "relation_to_type": "type", "validated": true, "ani": 75.9923, "matched_fragments": 74, "total_fragments": 1654, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chthoniobacter flavus", "strain": "strain=DSM 22515", "accession": "GCA_004341915.1", "taxid": 191863, "species_taxid": 191863, "relation_to_type": "type", "validated": true, "ani": 75.6007, 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95, "status": "below_threshold" }, { "organism_name": "Streptomyces thermoviolaceus subsp. thermoviolaceus", "strain": "strain=NBRC 13905", "accession": "GCA_012034235.1", "taxid": 66860, "species_taxid": 1952, "relation_to_type": "type", "validated": true, "ani": 74.6107, "matched_fragments": 52, "total_fragments": 1654, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces thermoviolaceus subsp. thermoviolaceus", "strain": "strain=JCM 4843", "accession": "GCA_014650975.1", "taxid": 66860, "species_taxid": 1952, "relation_to_type": "type", "validated": true, "ani": 74.6094, "matched_fragments": 53, "total_fragments": 1654, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.46, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903844265.1", "gtdb_species": "s__CAIMTB01 sp903844265", "ani": 100.0, "matched_fragments": 1630, "total_fragments": 1654, "gtdb_taxonomy": 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