{ "type": "genome", "identifier": "GCA_903845095.1", "organism": "uncultured Sphingomonadales bacterium", "title": "uncultured Sphingomonadales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903845095.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6955296", "wgs_master": "CAIMWC000000000.1", "refseq_category": "na", "taxid": "293405", "species_taxid": "293405", "organism_name": "uncultured Sphingomonadales bacterium", "infraspecific_name": "", "isolate": "AlinenLipids_bin-1472", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/19", "asm_name": "freshwater MAG --- AlinenLipids_bin-1472", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/845/095/GCA_903845095.1_freshwater_MAG_---_AlinenLipids_bin-1472", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-19", "dateModified": "2020-07-19", "datePublished": "2020-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Sphingomonadales bacterium" ], "sample_taxid": [ "293405" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "1.224 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.85, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4480736", "Number of Sequences": "49", "Longest Sequences (bp)": "452967", "N50 (bp)": "152036", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.9", "Number of CDSs": "3929", "Average Protein Length": "342.3", "Coding Ratio (%)": "90.0", "Number of rRNAs": "0", "Number of tRNAs": "49", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Novosphingobium acidiphilum", "strain": "strain=DSM 19966", "accession": "GCA_000429005.1", "taxid": 505248, "species_taxid": 505248, "relation_to_type": "type", "validated": true, "ani": 83.3745, "matched_fragments": 890, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium pokkalii", "strain": "strain=KCTC 42224", "accession": "GCA_014652855.1", "taxid": 1770194, "species_taxid": 1770194, "relation_to_type": "type", "validated": true, "ani": 79.8622, "matched_fragments": 609, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium capsulatum", "strain": "strain=NBRC 12533", "accession": "GCA_001598375.1", "taxid": 13688, "species_taxid": 13688, "relation_to_type": "type", "validated": true, "ani": 79.8204, "matched_fragments": 588, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium nitrogenifigens", "strain": "strain=DSM 19370", "accession": "GCA_000192575.1", "taxid": 378548, "species_taxid": 378548, "relation_to_type": "type", "validated": true, "ani": 79.481, "matched_fragments": 585, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium nitrogenifigens", "strain": "strain=DSM 19370", "accession": "GCA_000375445.1", "taxid": 378548, "species_taxid": 378548, "relation_to_type": "type", "validated": true, "ani": 79.4421, "matched_fragments": 594, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium percolationis", "strain": "strain=c1", "accession": "GCA_020179425.1", "taxid": 2871811, "species_taxid": 2871811, "relation_to_type": "type", "validated": true, "ani": 79.2678, "matched_fragments": 548, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium olei", "strain": "strain=TW-4", "accession": "GCA_012927405.1", "taxid": 2728851, "species_taxid": 2728851, "relation_to_type": "type", "validated": true, "ani": 79.1988, "matched_fragments": 502, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium huizhouense", "strain": "strain=c7", "accession": "GCA_020179475.1", "taxid": 2866625, "species_taxid": 2866625, "relation_to_type": "type", "validated": true, "ani": 79.07, "matched_fragments": 488, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium fuchskuhlense", "strain": "strain=FNE08-7", "accession": "GCA_001519075.1", "taxid": 1117702, "species_taxid": 1117702, "relation_to_type": "type", "validated": true, "ani": 78.4065, "matched_fragments": 488, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium jiangmenense", "strain": "strain=1Y9A", "accession": "GCA_015694345.1", "taxid": 2791981, "species_taxid": 2791981, "relation_to_type": "type", "validated": true, "ani": 78.3432, "matched_fragments": 477, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium sediminis", "strain": "strain=NBRC 106119", "accession": "GCA_007991615.1", "taxid": 707214, "species_taxid": 707214, "relation_to_type": "type", "validated": true, "ani": 78.331, "matched_fragments": 485, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium kunmingense", "strain": "strain=CGMCC 1.12274", "accession": "GCA_002813245.1", "taxid": 1211806, "species_taxid": 1211806, "relation_to_type": "type", "validated": true, "ani": 78.0929, "matched_fragments": 366, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium aquimarinum", "strain": "strain=M24A2M", "accession": "GCA_009746585.1", "taxid": 2682494, "species_taxid": 2682494, "relation_to_type": "type", "validated": true, "ani": 77.4706, "matched_fragments": 290, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas adhaesiva", "strain": "strain=NBRC 15099", "accession": "GCA_001592345.1", "taxid": 28212, "species_taxid": 28212, "relation_to_type": "type", "validated": true, "ani": 77.2809, "matched_fragments": 288, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceicoccus hydrothermalis", "strain": "strain=JLT1", "accession": "GCA_022378335.1", "taxid": 2867964, "species_taxid": 2867964, "relation_to_type": "type", "validated": true, "ani": 77.2066, "matched_fragments": 246, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas adhaesiva", "strain": "strain=DSM 7418", "accession": "GCA_002374855.1", "taxid": 28212, "species_taxid": 28212, "relation_to_type": "type", "validated": true, "ani": 77.1973, "matched_fragments": 330, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas ginsenosidimutans", "strain": "strain=KACC 14949", "accession": "GCA_002374835.1", "taxid": 862134, "species_taxid": 862134, "relation_to_type": "type", "validated": true, "ani": 77.0958, "matched_fragments": 314, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium decolorationis", "strain": "strain=502str22", "accession": "GCA_018417475.1", "taxid": 2698673, "species_taxid": 2698673, "relation_to_type": "type", "validated": true, "ani": 77.0568, "matched_fragments": 272, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas endophytica", "strain": "strain=DSM 101535", "accession": "GCA_014199415.1", "taxid": 869719, "species_taxid": 869719, "relation_to_type": "type", "validated": true, "ani": 76.7514, "matched_fragments": 230, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas phyllosphaerae", "strain": "strain=FA2", "accession": "GCA_000427645.1", "taxid": 257003, "species_taxid": 257003, "relation_to_type": "type", "validated": true, "ani": 76.7322, "matched_fragments": 225, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.85, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": 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