{ "type": "genome", "identifier": "GCA_903847385.1", "organism": "uncultured Myxococcales bacterium", "title": "uncultured Myxococcales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903847385.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6951742", "wgs_master": "CAINDO000000000.1", "refseq_category": "na", "taxid": "253830", "species_taxid": "253830", "organism_name": "uncultured Myxococcales bacterium", "infraspecific_name": "", "isolate": "Loclat_bin-06019", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/20", "asm_name": "freshwater MAG --- Loclat_bin-06019", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/847/385/GCA_903847385.1_freshwater_MAG_---_Loclat_bin-06019", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-20", "dateModified": "2020-07-20", "datePublished": "2020-07-20", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Myxococcales bacterium" ], "sample_taxid": [ "253830" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland" ], "sample_host_location_id": [], "data_size": "2.550 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 67.05, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "9484611", "Number of Sequences": "667", "Longest Sequences (bp)": "103666", "N50 (bp)": "25081", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.0", "Number of CDSs": "6563", "Average Protein Length": "397.3", "Coding Ratio (%)": "82.5", "Number of rRNAs": "1", "Number of tRNAs": "62", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vulgatibacter incomptus", "strain": "strain=DSM 27710", "accession": "GCA_001263175.1", "taxid": 1391653, "species_taxid": 1391653, "relation_to_type": "type", "validated": true, "ani": 75.4039, "matched_fragments": 196, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stigmatella erecta", "strain": "strain=DSM 16858", "accession": "GCA_900111745.1", "taxid": 83460, "species_taxid": 83460, "relation_to_type": "type", "validated": true, "ani": 75.1864, "matched_fragments": 327, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus interemptor", "strain": "strain=AB047A", "accession": "GCA_003668875.1", "taxid": 2316720, "species_taxid": 2316720, "relation_to_type": "type", "validated": true, "ani": 75.1513, "matched_fragments": 391, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Archangium violaceum", "strain": "strain=Cb vi76", "accession": "GCA_000733295.1", "taxid": 83451, "species_taxid": 83451, "relation_to_type": "type", "validated": true, "ani": 75.1454, "matched_fragments": 397, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus llansteffanensis", "strain": "strain=CA051B", "accession": "GCA_003612055.1", "taxid": 2316731, "species_taxid": 2316731, "relation_to_type": "type", "validated": true, "ani": 75.1357, "matched_fragments": 384, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaeromyxobacter dehalogenans", "strain": "strain=2CP-1", "accession": "GCA_000022145.1", "taxid": 161493, "species_taxid": 161493, "relation_to_type": "type", "validated": true, "ani": 75.122, "matched_fragments": 479, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera aminoaromatica", "strain": "strain=S2", "accession": "GCA_000310185.1", "taxid": 164330, "species_taxid": 164330, "relation_to_type": "type", "validated": true, "ani": 75.1103, "matched_fragments": 211, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stigmatella hybrida", "strain": "strain=DSM 14722", "accession": "GCA_020103775.1", "taxid": 394097, "species_taxid": 394097, "relation_to_type": "type", "validated": true, "ani": 75.1065, "matched_fragments": 330, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Archangium gephyra", "strain": "strain=DSM 2261", "accession": "GCA_003387095.1", "taxid": 48, "species_taxid": 48, "relation_to_type": "type", "validated": true, "ani": 75.083, "matched_fragments": 411, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Archangium gephyra", "strain": "strain=DSM 2261", "accession": "GCA_001027285.1", "taxid": 48, "species_taxid": 48, "relation_to_type": "type", "validated": true, "ani": 75.0804, "matched_fragments": 419, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera phenylacetica", "strain": "strain=B4P", "accession": "GCA_000310225.1", "taxid": 164400, "species_taxid": 164400, "relation_to_type": "type", "validated": true, "ani": 75.0329, "matched_fragments": 228, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera humireducens", "strain": "strain=SgZ-1", "accession": "GCA_001051995.2", "taxid": 1134435, "species_taxid": 1134435, "relation_to_type": "type", "validated": true, "ani": 75.0243, "matched_fragments": 158, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haliangium ochraceum", "strain": "strain=DSM 14365", "accession": "GCA_000024805.1", "taxid": 80816, "species_taxid": 80816, "relation_to_type": "type", "validated": true, "ani": 75.0098, "matched_fragments": 596, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pyxidicoccus caerfyrddinensis", "strain": "strain=CA032A", "accession": "GCA_010894405.1", "taxid": 2709663, "species_taxid": 2709663, "relation_to_type": "type", "validated": true, "ani": 75.0094, "matched_fragments": 523, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera linaloolentis", "strain": "strain=47Lol = DSM 12138", "accession": "GCA_000310205.1", "taxid": 76112, "species_taxid": 76112, "relation_to_type": "type", "validated": true, "ani": 74.9848, "matched_fragments": 157, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter rhizophilus", "strain": "strain=CCTCC AB2015357", "accession": "GCA_004681965.1", "taxid": 1781167, "species_taxid": 1781167, "relation_to_type": "type", "validated": true, "ani": 74.9585, "matched_fragments": 238, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera linaloolentis", "strain": "strain=DSM 12138", "accession": "GCA_000621305.1", "taxid": 76112, "species_taxid": 76112, "relation_to_type": "type", "validated": true, "ani": 74.9584, "matched_fragments": 172, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas thermotolerans", "strain": "strain=DSM 14292", "accession": "GCA_000364625.1", "taxid": 157784, "species_taxid": 157784, "relation_to_type": "type", "validated": true, "ani": 74.9479, "matched_fragments": 149, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera phenolivorans", "strain": "strain=ZV1C", "accession": "GCA_001696715.1", "taxid": 1792543, "species_taxid": 1792543, "relation_to_type": "type", "validated": true, "ani": 74.9445, "matched_fragments": 201, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter monticola", "strain": "strain=KACC 19175", "accession": "GCA_016722785.1", "taxid": 1926872, "species_taxid": 1926872, "relation_to_type": "type", "validated": true, "ani": 74.9372, "matched_fragments": 320, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solimonas variicoloris", "strain": "strain=DSM 15731", "accession": "GCA_000382285.1", "taxid": 254408, "species_taxid": 254408, "relation_to_type": "type", "validated": true, "ani": 74.9246, "matched_fragments": 276, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 74.9237, "matched_fragments": 205, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelomonas puraquae", "strain": "strain=CCUG 52769", "accession": "GCA_002205845.1", "taxid": 431059, "species_taxid": 431059, "relation_to_type": "type", "validated": true, "ani": 74.9136, "matched_fragments": 261, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solimonas soli", "strain": "strain=DSM 21787", "accession": "GCA_000474945.1", "taxid": 413479, "species_taxid": 413479, "relation_to_type": "type", "validated": true, "ani": 74.9079, "matched_fragments": 264, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium percolationis", "strain": "strain=c1", "accession": "GCA_020179425.1", "taxid": 2871811, "species_taxid": 2871811, "relation_to_type": "type", "validated": true, "ani": 74.9072, "matched_fragments": 124, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Minwuia thermotolerans", "strain": "strain=SY3-15", "accession": "GCA_002924445.1", "taxid": 2056226, "species_taxid": 2056226, "relation_to_type": "type", "validated": true, "ani": 74.9015, "matched_fragments": 196, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobaculum fulvum", "strain": "strain=KCTC 42651", "accession": "GCA_014652915.1", "taxid": 1633335, "species_taxid": 1633335, "relation_to_type": "type", "validated": true, "ani": 74.8867, "matched_fragments": 324, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucisphaera calidilacus", "strain": "strain=Pan265", "accession": "GCA_007748075.1", "taxid": 2527982, "species_taxid": 2527982, "relation_to_type": "type", "validated": true, "ani": 74.8844, "matched_fragments": 65, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dissulfurirhabdus thermomarina", "strain": "strain=DSM 100025", "accession": "GCA_010499435.1", "taxid": 1765737, "species_taxid": 1765737, "relation_to_type": "type", "validated": true, "ani": 74.8784, "matched_fragments": 103, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteitalea pratensis", "strain": "strain=DSM 100886; HEG_-6_39", "accession": "GCA_001618865.1", "taxid": 1855912, "species_taxid": 1855912, "relation_to_type": "type", "validated": true, "ani": 74.8779, "matched_fragments": 192, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum petrolei", "strain": "strain=ToN1", "accession": "GCA_017894385.1", "taxid": 76116, "species_taxid": 76116, "relation_to_type": "type", "validated": true, "ani": 74.8762, "matched_fragments": 165, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobium orientis", "strain": "strain=DSM 11290", "accession": "GCA_003258835.1", "taxid": 34017, "species_taxid": 34017, "relation_to_type": "type", "validated": true, "ani": 74.8688, "matched_fragments": 174, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinarimonas soli", "strain": "strain=BN140002", "accession": "GCA_008386575.1", "taxid": 1638099, "species_taxid": 1638099, "relation_to_type": "type", "validated": true, "ani": 74.8612, "matched_fragments": 241, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobium orientis", "strain": "strain=DSM 11290", "accession": "GCA_016653375.1", "taxid": 34017, "species_taxid": 34017, "relation_to_type": "type", "validated": true, "ani": 74.8597, "matched_fragments": 179, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobium orientis", "strain": "strain=DSM 11290", "accession": "GCA_014197785.1", "taxid": 34017, "species_taxid": 34017, "relation_to_type": "type", "validated": true, "ani": 74.8575, "matched_fragments": 179, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dissulfurirhabdus thermomarina", "strain": "strain=SH388", "accession": "GCA_012979235.1", "taxid": 1765737, "species_taxid": 1765737, "relation_to_type": "type", "validated": true, "ani": 74.8532, "matched_fragments": 114, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanicella actignis", "strain": "strain=DSM 22673", "accession": "GCA_008124525.1", "taxid": 1189325, "species_taxid": 1189325, "relation_to_type": "type", "validated": true, "ani": 74.8461, "matched_fragments": 301, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dokdonella koreensis", "strain": "strain=DS-123", "accession": "GCA_001632775.1", "taxid": 323415, "species_taxid": 323415, "relation_to_type": "type", "validated": true, "ani": 74.8378, "matched_fragments": 272, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas mesophila", "strain": "strain=SYSUP0001", "accession": "GCA_003499275.1", "taxid": 2303576, "species_taxid": 2303576, "relation_to_type": "type", "validated": true, "ani": 74.8076, "matched_fragments": 100, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pigmentiphaga kullae", "strain": "strain=K24", "accession": "GCA_004216695.1", "taxid": 151784, "species_taxid": 151784, "relation_to_type": "type", "validated": true, "ani": 74.7923, "matched_fragments": 255, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbidospora sakaeratensis", "strain": "strain=NBRC 102641", "accession": "GCA_001570525.1", "taxid": 564415, "species_taxid": 564415, "relation_to_type": "type", "validated": true, "ani": 74.7834, "matched_fragments": 432, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium nesterenkovii", "strain": "strain=CIP104813", "accession": "GCA_900163655.1", "taxid": 47847, "species_taxid": 47847, "relation_to_type": "type", "validated": true, "ani": 74.7681, "matched_fragments": 177, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lichenibacterium ramalinae", "strain": "strain=RmlP001", "accession": "GCA_004137085.1", "taxid": 2316527, "species_taxid": 2316527, "relation_to_type": "type", "validated": true, "ani": 74.7636, "matched_fragments": 338, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Asanoa iriomotensis", "strain": "strain=NBRC 100142", "accession": "GCA_016862515.1", "taxid": 234613, "species_taxid": 234613, "relation_to_type": "type", "validated": true, "ani": 74.7559, "matched_fragments": 437, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas flexibilis", "strain": "strain=ATCC 29606", "accession": "GCA_900155995.1", "taxid": 706570, "species_taxid": 706570, "relation_to_type": "type", "validated": true, "ani": 74.7542, "matched_fragments": 113, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas flexibilis", "strain": "strain=ATCC 29606", "accession": "GCA_000802425.1", "taxid": 706570, "species_taxid": 706570, "relation_to_type": "type", "validated": true, "ani": 74.7495, "matched_fragments": 114, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea roseoviolacea subsp. carminata", "strain": "strain=DSM 44170", "accession": "GCA_024172185.1", "taxid": 160689, "species_taxid": 103837, "relation_to_type": "type", "validated": true, "ani": 74.744, "matched_fragments": 521, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas radiodurans", "strain": "strain=S9-5", "accession": "GCA_020866845.1", "taxid": 2890321, "species_taxid": 2890321, "relation_to_type": "type", "validated": true, "ani": 74.7409, "matched_fragments": 92, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Asanoa ferruginea", "strain": "strain=DSM 44099", "accession": "GCA_003387075.1", "taxid": 53367, "species_taxid": 53367, "relation_to_type": "type", "validated": true, "ani": 74.7296, "matched_fragments": 422, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glycomyces tenuis", "strain": "strain=DSM 44171", "accession": "GCA_000427885.1", "taxid": 58116, "species_taxid": 58116, "relation_to_type": "type", "validated": true, "ani": 74.7256, "matched_fragments": 302, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Asanoa ferruginea", "strain": "strain=NBRC 14496", "accession": "GCA_016862495.1", "taxid": 53367, "species_taxid": 53367, "relation_to_type": "type", "validated": true, "ani": 74.7221, "matched_fragments": 419, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea endophytica", "strain": "strain=DSM 45385", "accession": "GCA_014203235.1", "taxid": 714136, "species_taxid": 714136, "relation_to_type": "type", "validated": true, "ani": 74.7202, "matched_fragments": 524, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glycomyces tenuis", "strain": "strain=NRRL B-16895", "accession": "GCA_000715885.1", "taxid": 58116, "species_taxid": 58116, "relation_to_type": "type", "validated": true, "ani": 74.7009, "matched_fragments": 311, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glycomyces xiaoerkulensis", "strain": "strain=TRM 41368", "accession": "GCA_002798405.1", "taxid": 2038139, "species_taxid": 2038139, "relation_to_type": "type", "validated": true, "ani": 74.6977, "matched_fragments": 217, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium funkei", "strain": "strain=NBRC 104118", "accession": "GCA_001570825.1", "taxid": 264251, "species_taxid": 264251, "relation_to_type": "suspected-type", "validated": true, "ani": 74.6762, "matched_fragments": 368, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glycomyces arizonensis", "strain": "strain=DSM 44726", "accession": "GCA_000482705.1", "taxid": 256035, "species_taxid": 256035, "relation_to_type": "type", "validated": true, "ani": 74.6582, "matched_fragments": 274, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Victivallis lenta", "strain": "strain=BBE-744-WT-12", "accession": "GCA_009695545.1", "taxid": 2606640, "species_taxid": 2606640, "relation_to_type": "type", "validated": true, "ani": 74.6481, "matched_fragments": 80, "total_fragments": 2798, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 67.05, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903847385.1", "gtdb_species": "s__CAINDO01 sp903847385", "ani": 100.0, "matched_fragments": 2775, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Bradymonadia;o__UBA7976;f__UBA1532;g__CAINDO01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_009692505.1", "gtdb_species": "s__SHZC01 sp009692505", "ani": 76.9198, "matched_fragments": 478, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Bradymonadia;o__UBA7976;f__UBA1532;g__SHZC01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018813065.1", "gtdb_species": "s__JAHJCH01 sp018813065", "ani": 75.6354, "matched_fragments": 263, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Bradymonadia;o__UBA7976;f__UBA1532;g__JAHJCH01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.74", "min_intra_species_ani": "99.61", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_002309015.1", "gtdb_species": "s__UBA1238 sp002309015", "ani": 75.2995, "matched_fragments": 50, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Bradymonadia;o__UBA7976;f__UBA1532;g__UBA1238", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_006226595.1", "gtdb_species": "s__M1803 sp006226595", "ani": 75.2201, "matched_fragments": 358, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__GCA-2862545;g__M1803", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000964525.1", "gtdb_species": "s__Anaeromyxobacter sp000964525", "ani": 75.1904, "matched_fragments": 421, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Anaeromyxobacteraceae;g__Anaeromyxobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903855945.1", "gtdb_species": "s__CAIOAK01 sp903855945", "ani": 75.1779, "matched_fragments": 204, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Anaeromyxobacteraceae;g__CAIOAK01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.84", "min_intra_species_ani": "99.84", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016707895.1", "gtdb_species": "s__UBA2376 sp016707895", "ani": 75.1315, "matched_fragments": 854, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Haliangiales;f__Haliangiaceae;g__UBA2376", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.64", "min_intra_species_ani": "99.63", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000022145.1", "gtdb_species": "s__Anaeromyxobacter dehalogenans", "ani": 75.1006, "matched_fragments": 494, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Anaeromyxobacteraceae;g__Anaeromyxobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.16", "min_intra_species_ani": "97.16", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903845045.1", "gtdb_species": "s__SCUS01 sp903845045", "ani": 75.0827, "matched_fragments": 500, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__Ga0077539;g__SCUS01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.02", "min_intra_species_ani": "99.02", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002343455.1", "gtdb_species": "s__UBA2385 sp002343455", "ani": 75.02, "matched_fragments": 360, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__UBA2385;g__UBA2385", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017301735.1", "gtdb_species": "s__Myxococcus sp017301735", "ani": 75.0144, "matched_fragments": 435, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Myxococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016873255.1", "gtdb_species": "s__UBA966 sp016873255", "ani": 74.9918, "matched_fragments": 157, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__SM1A02;g__UBA966", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016192135.1", "gtdb_species": "s__2-12-FULL-69-37 sp016192135", "ani": 74.9622, "matched_fragments": 140, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__UBA8248;c__UBA8248;o__UBA8248;f__UBA8248;g__2-12-FULL-69-37", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903828235.1", "gtdb_species": "s__Rubrivivax sp903828235", "ani": 74.9394, "matched_fragments": 362, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Rubrivivax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.94", "min_intra_species_ani": "99.91", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_001464065.1", "gtdb_species": "s__Luteitalea sp001464065", "ani": 74.9329, "matched_fragments": 235, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__Vicinamibacteraceae;g__Luteitalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018883105.1", "gtdb_species": "s__UBA966 sp018883105", "ani": 74.9263, "matched_fragments": 157, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__SM1A02;g__UBA966", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018398425.1", "gtdb_species": "s__Pseudomonas_E lalucatii", "ani": 74.9224, "matched_fragments": 205, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.68", "min_intra_species_ani": "99.28", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_903897935.1", "gtdb_species": "s__CAIUDO01 sp903897935", "ani": 74.9114, "matched_fragments": 334, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__GCA-2862545;g__CAIUDO01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016792625.1", "gtdb_species": "s__JAEUKK01 sp016792625", "ani": 74.9041, "matched_fragments": 531, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__UBA2385;g__JAEUKK01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014652915.1", "gtdb_species": "s__Thalassobaculum_A fulvum", "ani": 74.8932, "matched_fragments": 326, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Thalassobaculales;f__Thalassobaculaceae;g__Thalassobaculum_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001618865.1", "gtdb_species": "s__Luteitalea pratensis", "ani": 74.8816, "matched_fragments": 191, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__Vicinamibacteraceae;g__Luteitalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009799925.1", "gtdb_species": "s__Pseudomonas_E sp009799925", "ani": 74.8815, "matched_fragments": 175, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003258835.1", "gtdb_species": "s__Rhodobium orientis", "ani": 74.8728, "matched_fragments": 178, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhodobiaceae;g__Rhodobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_005503065.1", "gtdb_species": "s__ALPHA2B sp005503065", "ani": 74.8566, "matched_fragments": 283, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__ALPHA2B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016790225.1", "gtdb_species": "s__Rubrivivax sp016790225", "ani": 74.8546, "matched_fragments": 211, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Rubrivivax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016200085.1", "gtdb_species": "s__JACQFL01 sp016200085", "ani": 74.8541, "matched_fragments": 207, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Methylomirabilota;c__Methylomirabilia;o__Rokubacteriales;f__CSP1-6;g__JACQFL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.46", "min_intra_species_ani": "99.46", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.82", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903880005.1", "gtdb_species": "s__UBA6176 sp903880005", "ani": 74.853, "matched_fragments": 78, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__UBA9464;g__UBA6176", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.64", "min_intra_species_ani": "99.45", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.88", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_016712315.1", "gtdb_species": "s__JADJRG01 sp016712315", "ani": 74.8399, "matched_fragments": 421, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Nannocystales;f__Nannocystaceae;g__JADJRG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002862085.1", "gtdb_species": "s__GCA-2862085 sp002862085", "ani": 74.83, "matched_fragments": 223, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__UBA1135;o__UBA1135;f__GCA-002686595;g__GCA-2862085", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003201205.1", "gtdb_species": "s__Sinimarinibacterium flocculans", "ani": 74.8136, "matched_fragments": 194, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nevskiales;f__Nevskiaceae;g__Sinimarinibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011525985.1", "gtdb_species": "s__Rubrivivax sp011525985", "ani": 74.8112, "matched_fragments": 165, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Rubrivivax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900163655.1", "gtdb_species": "s__Brachybacterium nesterenkovii", "ani": 74.7566, "matched_fragments": 182, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermabacteraceae;g__Brachybacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903831455.1", "gtdb_species": "s__CAIKXV01 sp903831455", "ani": 74.7539, "matched_fragments": 206, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__CAIKXV01;g__CAIKXV01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.62", "min_intra_species_ani": "99.56", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_009360345.1", "gtdb_species": "s__Pigmentiphaga sp009360345", "ani": 74.7384, "matched_fragments": 203, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pigmentiphaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.85", "min_intra_species_ani": "99.84", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_012515115.1", "gtdb_species": "s__JAAYYZ01 sp012515115", "ani": 74.7364, "matched_fragments": 70, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Hydrogenedentota;c__Hydrogenedentia;o__Hydrogenedentiales;f__CAITNO01;g__JAAYYZ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002798405.1", "gtdb_species": "s__Glycomyces xiaoerkulensis", "ani": 74.6938, "matched_fragments": 219, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Glycomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003220435.1", "gtdb_species": "s__AR31 sp003220435", "ani": 74.6874, "matched_fragments": 223, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Methylomirabilota;c__Methylomirabilia;o__Rokubacteriales;f__CSP1-6;g__AR31", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014379045.1", "gtdb_species": "s__CAIKXV01 sp014379045", "ani": 74.6599, "matched_fragments": 79, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__CAIKXV01;g__CAIKXV01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009695545.1", "gtdb_species": "s__Victivallis lenta", "ani": 74.6395, "matched_fragments": 81, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Lentisphaeria;o__Victivallales;f__Victivallaceae;g__Victivallis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.99", "min_intra_species_ani": "98.42", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCA_018432315.1", "gtdb_species": "s__LM3-B42 sp018432315", "ani": 74.5622, "matched_fragments": 137, "total_fragments": 2798, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Aggregatilineales;f__Aggregatilineaceae;g__LM3-B42", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.126, "cell_length": 0.61, "doubling_h": 0.801, "growth_tmp": 28.761, "optimum_tmp": 29.364, "optimum_ph": 7.8, "genome_size": 9965390.721, "gc_content": 69.329, "coding_genes": 8198.189, "rRNA16S_genes": 3.222, "tRNA_genes": 63.782, "gram_stain": 0.0, "sporulation": 0.928, "motility": 0.941, "range_salinity": 0.75, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Myxococcota", "c__Bradymonadia", "o__UBA7976", "f__UBA1532", "g__CAINDO01", "s__CAINDO01 sp903847385" ], "_genome_taxon": [ "uncultured", "Myxococcales", "bacterium", "d__Bacteria", "p__Myxococcota", "c__Bradymonadia", "o__UBA7976", "f__UBA1532", "g__CAINDO01", "s__CAINDO01 sp903847385", "Bacteria", "Myxococcota", "Bradymonadia", "UBA7976", "UBA1532", "CAINDO01", "CAINDO01", "sp903847385" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }