{ "type": "genome", "identifier": "GCA_903848765.1", "organism": "uncultured Verrucomicrobiota bacterium", "title": "uncultured Verrucomicrobiota bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903848765.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6947023", "wgs_master": "CAINHF000000000.1", "refseq_category": "na", "taxid": "156588", "species_taxid": "156588", "organism_name": "uncultured Verrucomicrobiota bacterium", "infraspecific_name": "", "isolate": "Erken-D9_bin-0098", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/20", "asm_name": "freshwater MAG --- Erken-D9_bin-0098", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/848/765/GCA_903848765.1_freshwater_MAG_---_Erken-D9_bin-0098", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-20", "dateModified": "2020-07-20", "datePublished": "2020-07-20", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Verrucomicrobiota bacterium" ], "sample_taxid": [ "156588" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "1.333 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 151.0, "max": 151.0 }, "completeness": 81.25, "contamination": 10.88, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4725100", "Number of Sequences": "1521", "Longest Sequences (bp)": "15565", "N50 (bp)": "3336", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.8", "Number of CDSs": "2548", "Average Protein Length": "305.5", "Coding Ratio (%)": "49.4", "Number of rRNAs": "0", "Number of tRNAs": "29", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prosthecobacter vanneervenii", "strain": "strain=DSM 12252", "accession": "GCA_014203095.1", "taxid": 48466, "species_taxid": 48466, "relation_to_type": "type", "validated": true, "ani": 78.4298, "matched_fragments": 261, "total_fragments": 701, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevifollis gellanilyticus", "strain": "strain=NBRC 108608", "accession": "GCA_007992435.1", "taxid": 748831, "species_taxid": 748831, "relation_to_type": "type", "validated": true, "ani": 77.7934, "matched_fragments": 231, "total_fragments": 701, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prosthecobacter debontii", "strain": "strain=ATCC 700200", "accession": "GCA_900167535.1", "taxid": 48467, "species_taxid": 48467, "relation_to_type": "type", "validated": true, "ani": 77.4507, "matched_fragments": 103, "total_fragments": 701, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prosthecobacter fusiformis", "strain": "strain=ATCC 25309", "accession": "GCA_004364345.1", "taxid": 48464, "species_taxid": 48464, "relation_to_type": "type", "validated": true, "ani": 77.2983, "matched_fragments": 101, "total_fragments": 701, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prosthecobacter dejongeii", "strain": "strain=DSM 12251", "accession": "GCA_014203045.1", "taxid": 48465, "species_taxid": 48465, "relation_to_type": "type", "validated": true, "ani": 77.1983, "matched_fragments": 109, "total_fragments": 701, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phragmitibacter flavus", "strain": "strain=MG-N-17", "accession": "GCA_005780165.1", "taxid": 2576071, "species_taxid": 2576071, "relation_to_type": "type", "validated": true, "ani": 76.9161, "matched_fragments": 57, "total_fragments": 701, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseimicrobium gellanilyticum", "strain": "strain=DSM 25532", "accession": "GCA_003315205.1", "taxid": 748857, "species_taxid": 748857, "relation_to_type": "type", "validated": true, "ani": 76.9108, "matched_fragments": 101, "total_fragments": 701, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Verrucomicrobium spinosum", "strain": "strain=DSM 4136", "accession": "GCA_000172155.1", "taxid": 2736, "species_taxid": 2736, "relation_to_type": "type", "validated": true, "ani": 76.274, "matched_fragments": 88, "total_fragments": 701, "ani_threshold": 95, "status": "below_threshold" }, { 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