{ "type": "genome", "identifier": "GCA_903849705.1", "organism": "uncultured Syntrophaceae bacterium", "title": "uncultured Syntrophaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903849705.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6946257", "wgs_master": "CAINJO000000000.1", "refseq_category": "na", "taxid": "293303", "species_taxid": "293303", "organism_name": "uncultured Syntrophaceae bacterium", "infraspecific_name": "", "isolate": "AM-sed-core1-D0_bin-826", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/17", "asm_name": "freshwater MAG --- AM-sed-core1-D0_bin-826", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/849/705/GCA_903849705.1_freshwater_MAG_---_AM-sed-core1-D0_bin-826", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-17", "dateModified": "2020-07-17", "datePublished": "2020-07-17", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Syntrophaceae bacterium" ], "sample_taxid": [ "293303" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "0.483 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.08, "strain_heterogeneity": 11.11, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1655764", "Number of Sequences": "528", "Longest Sequences (bp)": "15587", "N50 (bp)": "3406", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "48.2", "Number of CDSs": "1198", "Average Protein Length": "268.5", "Coding Ratio (%)": "58.3", "Number of rRNAs": "1", "Number of tRNAs": "25", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 100.0, "contamination": 8.08, "strain_heterogeneity": 11.11 }, "gtdb_result": [ { "accession": "GCA_903893135.1", "gtdb_species": "s__Fen-1135 sp903893135", "ani": 97.8654, "matched_fragments": 221, "total_fragments": 237, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__UBA2185;g__Fen-1135", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.48", "min_intra_species_ani": "99.48", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_003142295.1", "gtdb_species": "s__Fen-1135 sp003142295", "ani": 94.2084, "matched_fragments": 212, "total_fragments": 237, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__UBA2185;g__Fen-1135", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003142635.1", "gtdb_species": "s__Fen-1135 sp003142635", "ani": 86.9407, "matched_fragments": 208, "total_fragments": 237, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__UBA2185;g__Fen-1135", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.63", "min_intra_species_ani": "99.63", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.81", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003153775.1", "gtdb_species": "s__Fen-1135 sp003153775", "ani": 86.9122, "matched_fragments": 215, "total_fragments": 237, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__UBA2185;g__Fen-1135", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.87", "min_intra_species_ani": "99.87", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_017885225.1", "gtdb_species": "s__UBA2185 sp017885225", "ani": 77.7458, "matched_fragments": 73, "total_fragments": 237, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__UBA2185;g__UBA2185", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003508565.1", "gtdb_species": "s__UBA2185 sp003508565", "ani": 77.107, "matched_fragments": 56, "total_fragments": 237, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__UBA2185;g__UBA2185", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.23", "min_intra_species_ani": "99.23", "mean_intra_species_af": "0.70", "min_intra_species_af": "0.70", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.094, "cell_length": 0.377, "doubling_h": 1.431, "growth_tmp": 35.0, "optimum_tmp": 34.722, "optimum_ph": 7.149, "genome_size": 4176389.15, "gc_content": 50.41, "coding_genes": 3784.666, "rRNA16S_genes": 1.0, "tRNA_genes": 48.333, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.666, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.333, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Desulfobacterota", "c__Syntrophia", "o__Syntrophales", "f__UBA2185", "g__Fen-1135", "s__Fen-1135 sp903893135" ], "_genome_taxon": [ "uncultured", "Syntrophaceae", "bacterium", "d__Bacteria", "p__Desulfobacterota", "c__Syntrophia", "o__Syntrophales", "f__UBA2185", "g__Fen-1135", "s__Fen-1135 sp903893135", "Bacteria", "Desulfobacterota", "Syntrophia", "Syntrophales", "UBA2185", "Fen-1135", "Fen-1135", "sp903893135" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000066", "label": "sediment" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }