{ "type": "genome", "identifier": "GCA_903851085.1", "organism": "uncultured beta proteobacterium", "title": "uncultured beta proteobacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903851085.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6954845", "wgs_master": "CAINNI000000000.1", "refseq_category": "na", "taxid": "86027", "species_taxid": "86027", "organism_name": "uncultured beta proteobacterium", "infraspecific_name": "", "isolate": "Kiruna1_bin-421", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/17", "asm_name": "freshwater MAG --- Kiruna1_bin-421", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/851/085/GCA_903851085.1_freshwater_MAG_---_Kiruna1_bin-421", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-17", "dateModified": "2020-07-17", "datePublished": "2020-07-17", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured beta proteobacterium" ], "sample_taxid": [ "86027" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "0.306 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 46.35, "contamination": 9.26, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1053153", "Number of Sequences": "336", "Longest Sequences (bp)": "12680", "N50 (bp)": "3202", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.7", "Number of CDSs": "745", "Average Protein Length": "274.2", "Coding Ratio (%)": "58.2", "Number of rRNAs": "0", "Number of tRNAs": "7", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Polynucleobacter finlandensis", "strain": "strain=MWH-Mekk-B1", "accession": "GCA_018881755.1", "taxid": 1855894, "species_taxid": 1855894, "relation_to_type": "type", "validated": true, "ani": 97.1051, "matched_fragments": 149, "total_fragments": 157, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Polynucleobacter parvulilacunae", "strain": "strain=Ross1-W9", "accession": "GCA_018881715.1", "taxid": 1855631, "species_taxid": 1855631, "relation_to_type": "type", "validated": true, "ani": 80.1781, "matched_fragments": 74, "total_fragments": 157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter alcilacus", "strain": "strain=UK-Pondora-W15", "accession": "GCA_018881545.1", "taxid": 1819739, "species_taxid": 1819739, "relation_to_type": "type", "validated": true, "ani": 80.0311, "matched_fragments": 75, "total_fragments": 157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter corsicus", "strain": "strain=AP-Melu-1000-A1", "accession": "GCA_018688255.1", "taxid": 2081042, "species_taxid": 2081042, "relation_to_type": "type", "validated": true, "ani": 79.5533, "matched_fragments": 76, "total_fragments": 157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter aenigmaticus", "strain": "strain=MWH-K35W1", "accession": "GCA_002206635.1", "taxid": 1743164, "species_taxid": 1743164, "relation_to_type": "type", "validated": true, "ani": 79.5293, "matched_fragments": 75, "total_fragments": 157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter ibericus", "strain": "strain=es-MAR-2", "accession": "GCA_018687955.1", "taxid": 1819725, "species_taxid": 1819725, "relation_to_type": "type", "validated": true, "ani": 79.5144, "matched_fragments": 74, "total_fragments": 157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter nymphae", "strain": "strain=AP-Mumm-500A-B3", "accession": "GCA_018882155.1", "taxid": 2081043, "species_taxid": 2081043, "relation_to_type": "type", "validated": true, "ani": 79.5037, "matched_fragments": 79, "total_fragments": 157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter duraquae", "strain": "strain=MWH-MoK4", "accession": "GCA_000973625.1", "taxid": 1835254, "species_taxid": 1835254, "relation_to_type": "type", "validated": true, "ani": 79.4756, "matched_fragments": 64, "total_fragments": 157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter hallstattensis", "strain": "strain=MWH-Hall10", "accession": "GCA_018881835.1", "taxid": 1855586, "species_taxid": 1855586, "relation_to_type": "type", "validated": true, "ani": 79.3728, "matched_fragments": 64, "total_fragments": 157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter arcticus", "strain": "strain=UK-Long2-W17", "accession": "GCA_013307205.1", "taxid": 1743165, "species_taxid": 1743165, "relation_to_type": "type", "validated": true, "ani": 79.311, "matched_fragments": 69, "total_fragments": 157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter sinensis", "strain": "strain=MWH-HuW1", "accession": "GCA_001595985.1", "taxid": 1743157, "species_taxid": 1743157, "relation_to_type": "type", "validated": true, "ani": 79.2874, "matched_fragments": 61, "total_fragments": 157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter bastaniensis", "strain": "strain=AP-Basta-1000A-D1", "accession": "GCA_018882205.1", "taxid": 2081039, "species_taxid": 2081039, "relation_to_type": "type", "validated": true, "ani": 79.0941, "matched_fragments": 72, "total_fragments": 157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter tropicus", "strain": "strain=MWH-UH21B", "accession": "GCA_013307225.1", "taxid": 1743174, "species_taxid": 1743174, "relation_to_type": "type", "validated": true, "ani": 79.0037, "matched_fragments": 65, "total_fragments": 157, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 46.35, "contamination": 9.26, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_018881755.1", "gtdb_species": "s__Polynucleobacter sp903953215", "ani": 97.1051, "matched_fragments": 149, "total_fragments": 157, "gtdb_taxonomy": 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