{ "type": "genome", "identifier": "GCA_903852025.1", "organism": "uncultured beta proteobacterium", "title": "uncultured beta proteobacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903852025.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6947139", "wgs_master": "CAINPU000000000.1", "refseq_category": "na", "taxid": "86027", "species_taxid": "86027", "organism_name": "uncultured beta proteobacterium", "infraspecific_name": "", "isolate": "AM-lipid-01-D7_bin-0427", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/18", "asm_name": "freshwater MAG --- AM-lipid-01-D7_bin-0427", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/852/025/GCA_903852025.1_freshwater_MAG_---_AM-lipid-01-D7_bin-0427", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-18", "dateModified": "2020-07-18", "datePublished": "2020-07-18", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured beta proteobacterium" ], "sample_taxid": [ "86027" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "0.801 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 51.0, "max": 51.0 }, "completeness": 37.55, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2811177", "Number of Sequences": "929", "Longest Sequences (bp)": "11043", "N50 (bp)": "3231", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.3", "Number of CDSs": "1906", "Average Protein Length": "269.4", "Coding Ratio (%)": "54.8", "Number of rRNAs": "0", "Number of tRNAs": "15", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodoferax lacus", "strain": "strain=IMCC26218", "accession": "GCA_003415675.1", "taxid": 2184758, "species_taxid": 2184758, "relation_to_type": "type", "validated": true, "ani": 82.3344, "matched_fragments": 280, "total_fragments": 402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax saidenbachensis", "strain": "strain=DSM 22694", "accession": "GCA_001955715.1", "taxid": 1484693, "species_taxid": 1484693, "relation_to_type": "type", "validated": true, "ani": 79.3277, "matched_fragments": 159, 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"below_threshold" }, { "organism_name": "Hydrogenophaga taeniospiralis", "strain": "strain=NBRC 102512", "accession": "GCA_001592305.1", "taxid": 65656, "species_taxid": 65656, "relation_to_type": "type", "validated": true, "ani": 78.3004, "matched_fragments": 148, "total_fragments": 402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax delafieldii", "strain": "strain=DSM 64", "accession": "GCA_007993815.1", "taxid": 47920, "species_taxid": 47920, "relation_to_type": "type", "validated": true, "ani": 78.1828, "matched_fragments": 139, "total_fragments": 402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhodoferax soli", "strain": "strain=DSM 21634", "accession": "GCA_003337555.1", "taxid": 545864, "species_taxid": 545864, "relation_to_type": "type", "validated": true, "ani": 77.8037, "matched_fragments": 150, "total_fragments": 402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans 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