{ "type": "genome", "identifier": "GCA_903852385.1", "organism": "uncultured Chlorobiales bacterium", "title": "uncultured Chlorobiales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903852385.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6947873", "wgs_master": "CAINQU000000000.1", "refseq_category": "na", "taxid": "904064", "species_taxid": "904064", "organism_name": "uncultured Chlorobiales bacterium", "infraspecific_name": "", "isolate": "YR2_bin-0650", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/18", "asm_name": "freshwater MAG --- YR2_bin-0650", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/852/385/GCA_903852385.1_freshwater_MAG_---_YR2_bin-0650", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-18", "dateModified": "2020-07-18", "datePublished": "2020-07-18", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Chlorobiales bacterium" ], "sample_taxid": [ "904064" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "0.625 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 115.0, "max": 115.0 }, "completeness": 79.17, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2202751", "Number of Sequences": "67", "Longest Sequences (bp)": "190600", "N50 (bp)": "106002", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.8", "Number of CDSs": "1945", "Average Protein Length": "319.4", "Coding Ratio (%)": "84.6", "Number of rRNAs": "0", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chlorobaculum thiosulfatiphilum", "strain": "strain=DSM 249", "accession": "GCA_006265165.1", "taxid": 115852, "species_taxid": 115852, "relation_to_type": "type", "validated": true, "ani": 79.2853, "matched_fragments": 312, "total_fragments": 697, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chlorobaculum limnaeum", "strain": "strain=DSM 1677", "accession": "GCA_001747405.1", "taxid": 274537, "species_taxid": 274537, "relation_to_type": "type", "validated": true, "ani": 79.2471, "matched_fragments": 331, 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"organism_name": "Prosthecochloris vibrioformis", "strain": "strain=DSM 260", "accession": "GCA_006265245.1", "taxid": 1098, "species_taxid": 1098, "relation_to_type": "type", "validated": true, "ani": 76.5836, "matched_fragments": 65, "total_fragments": 697, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chlorobium phaeobacteroides", "strain": "strain=DSM 266", "accession": "GCA_000015125.1", "taxid": 1096, "species_taxid": 1096, "relation_to_type": "type", "validated": true, "ani": 76.1376, "matched_fragments": 73, "total_fragments": 697, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 79.17, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903929135.1", "gtdb_species": "s__Chlorobaculum sp903929135", "ani": 99.9373, "matched_fragments": 653, "total_fragments": 697, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobaculum", 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