{ "type": "genome", "identifier": "GCA_903852515.1", "organism": "uncultured Geobacteraceae bacterium", "title": "uncultured Geobacteraceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903852515.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6947986", "wgs_master": "CAINRF000000000.1", "refseq_category": "na", "taxid": "214033", "species_taxid": "214033", "organism_name": "uncultured Geobacteraceae bacterium", "infraspecific_name": "", "isolate": "MJ120730B_bin-100", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/18", "asm_name": "freshwater MAG --- MJ120730B_bin-100", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/852/515/GCA_903852515.1_freshwater_MAG_---_MJ120730B_bin-100", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-18", "dateModified": "2020-07-18", "datePublished": "2020-07-18", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Geobacteraceae bacterium" ], "sample_taxid": [ "214033" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "0.557 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 588.0, "max": 588.0 }, "completeness": 44.68, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1925622", "Number of Sequences": "617", "Longest Sequences (bp)": "12244", "N50 (bp)": "3312", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.8", "Number of CDSs": "1295", "Average Protein Length": "284.9", "Coding Ratio (%)": "57.5", "Number of rRNAs": "1", "Number of tRNAs": "22", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pelobacter propionicus", "strain": "strain=DSM 2379", "accession": "GCA_000015045.1", "taxid": 29543, "species_taxid": 29543, "relation_to_type": "type", "validated": true, "ani": 77.3028, "matched_fragments": 52, "total_fragments": 284, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oryzomonas rubra", "strain": "strain=Red88", "accession": "GCA_008369015.1", "taxid": 2509454, "species_taxid": 2509454, "relation_to_type": "type", "validated": true, "ani": 77.2419, "matched_fragments": 62, "total_fragments": 284, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oryzomonas sagensis", "strain": "strain=Red100", "accession": "GCA_008802355.1", "taxid": 2603857, "species_taxid": 2603857, "relation_to_type": "type", "validated": true, "ani": 77.0519, "matched_fragments": 62, "total_fragments": 284, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oryzomonas japonica", "strain": "strain=Red96", "accession": "GCA_008802365.1", "taxid": 2603858, "species_taxid": 2603858, "relation_to_type": "type", "validated": true, "ani": 76.9143, "matched_fragments": 58, "total_fragments": 284, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 44.68, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903852495.1", "gtdb_species": "s__JACRCG01 sp903852495", "ani": 99.7623, "matched_fragments": 279, "total_fragments": 284, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Pseudopelobacteraceae;g__JACRCG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.47", "min_intra_species_ani": "98.75", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.82", "num_clustered_genomes": 26, "status": "conclusive" }, { "accession": "GCA_903862245.1", "gtdb_species": "s__JACRCG01 sp903862245", "ani": 88.4247, "matched_fragments": 243, "total_fragments": 284, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Pseudopelobacteraceae;g__JACRCG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.89", "min_intra_species_ani": "99.85", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_009886055.1", "gtdb_species": "s__JACRCG01 sp009886055", "ani": 79.4966, "matched_fragments": 137, "total_fragments": 284, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Pseudopelobacteraceae;g__JACRCG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903925005.1", "gtdb_species": "s__JACRCG01 sp903925005", "ani": 78.4929, "matched_fragments": 132, "total_fragments": 284, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Pseudopelobacteraceae;g__JACRCG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.76", "min_intra_species_ani": "99.70", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_019162745.1", "gtdb_species": "s__JACRCG01 sp019162745", "ani": 78.298, "matched_fragments": 130, "total_fragments": 284, "gtdb_taxonomy": 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"d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Pseudopelobacteraceae;g__JACRCG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013336525.1", "gtdb_species": "s__JACRCG01 sp013336525", "ani": 77.8163, "matched_fragments": 109, "total_fragments": 284, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Pseudopelobacteraceae;g__JACRCG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_013349405.1", "gtdb_species": "s__JACRCG01 sp013349405", "ani": 77.7642, "matched_fragments": 93, "total_fragments": 284, "gtdb_taxonomy": 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"Pseudopelobacteraceae", "JACRCG01", "JACRCG01", "sp903852495" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }