{ "type": "genome", "identifier": "GCA_903852565.1", "organism": "uncultured beta proteobacterium", "title": "uncultured beta proteobacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903852565.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6948368", "wgs_master": "CAINRL000000000.1", "refseq_category": "na", "taxid": "86027", "species_taxid": "86027", "organism_name": "uncultured beta proteobacterium", "infraspecific_name": "", "isolate": "MJ-2014-D3_bin-037", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/17", "asm_name": "freshwater MAG --- MJ-2014-D3_bin-037", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/852/565/GCA_903852565.1_freshwater_MAG_---_MJ-2014-D3_bin-037", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-17", "dateModified": "2020-07-17", "datePublished": "2020-07-17", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured beta proteobacterium" ], "sample_taxid": [ "86027" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "0.530 MB", "sample_ph_range": { "min": 56.0, "max": 56.0 }, "sample_temperature_range": { "min": 11.0, "max": 11.0 }, "completeness": 27.08, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1830335", "Number of Sequences": "423", "Longest Sequences (bp)": "43681", "N50 (bp)": "5896", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.0", "Number of CDSs": "1572", "Average Protein Length": "275.2", "Coding Ratio (%)": "70.9", "Number of rRNAs": "0", "Number of tRNAs": "33", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Polynucleobacter finlandensis", "strain": "strain=MWH-Mekk-B1", "accession": "GCA_018881755.1", "taxid": 1855894, "species_taxid": 1855894, "relation_to_type": "type", "validated": true, "ani": 91.7085, "matched_fragments": 263, "total_fragments": 382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter ibericus", "strain": "strain=es-MAR-2", "accession": "GCA_018687955.1", "taxid": 1819725, "species_taxid": 1819725, "relation_to_type": "type", "validated": true, "ani": 78.7625, "matched_fragments": 113, "total_fragments": 382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter alcilacus", "strain": "strain=UK-Pondora-W15", "accession": "GCA_018881545.1", "taxid": 1819739, "species_taxid": 1819739, "relation_to_type": "type", "validated": true, "ani": 78.6527, "matched_fragments": 105, "total_fragments": 382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter aenigmaticus", "strain": "strain=MWH-K35W1", "accession": "GCA_002206635.1", "taxid": 1743164, "species_taxid": 1743164, "relation_to_type": "type", "validated": true, "ani": 78.5987, "matched_fragments": 115, "total_fragments": 382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter parvulilacunae", "strain": "strain=Ross1-W9", "accession": "GCA_018881715.1", "taxid": 1855631, "species_taxid": 1855631, "relation_to_type": "type", "validated": true, "ani": 78.5642, "matched_fragments": 128, "total_fragments": 382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter campilacus", "strain": "strain=MWH-Feld-100", "accession": "GCA_002206625.1", "taxid": 1743163, "species_taxid": 1743163, "relation_to_type": "type", "validated": true, "ani": 78.0836, "matched_fragments": 104, "total_fragments": 382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter arcticus", "strain": "strain=UK-Long2-W17", "accession": "GCA_013307205.1", "taxid": 1743165, "species_taxid": 1743165, "relation_to_type": "type", "validated": true, "ani": 77.6639, "matched_fragments": 105, "total_fragments": 382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter brandtiae", "strain": "strain=UB-Domo-W1", "accession": "GCA_002797575.1", "taxid": 1938816, "species_taxid": 1938816, "relation_to_type": "type", "validated": true, "ani": 77.5081, "matched_fragments": 84, "total_fragments": 382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter meluiroseus", "strain": "strain=AP-Melu-1000-B4", "accession": "GCA_900205755.1", "taxid": 1938814, "species_taxid": 1938814, "relation_to_type": "type", "validated": true, "ani": 77.0902, "matched_fragments": 60, "total_fragments": 382, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 27.08, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_018881755.1", "gtdb_species": "s__Polynucleobacter sp903953215", "ani": 91.7085, "matched_fragments": 263, "total_fragments": 382, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.19", "min_intra_species_ani": "97.38", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.86", "num_clustered_genomes": 15, "status": "-" }, { 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