{ "type": "genome", "identifier": "GCA_903852595.1", "organism": "uncultured Methanosarcinales archaeon", "title": "uncultured Methanosarcinales archaeon", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903852595.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6948515", "wgs_master": "CAINRJ000000000.1", "refseq_category": "na", "taxid": "183757", "species_taxid": "183757", "organism_name": "uncultured Methanosarcinales archaeon", "infraspecific_name": "", "isolate": "AM-sed-core2-D0_bin-0305", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/17", "asm_name": "freshwater MAG --- AM-sed-core2-D0_bin-0305", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/852/595/GCA_903852595.1_freshwater_MAG_---_AM-sed-core2-D0_bin-0305", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-17", "dateModified": "2020-07-17", "datePublished": "2020-07-17", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Methanosarcinales archaeon" ], "sample_taxid": [ "183757" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "0.421 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 71.64, "contamination": 0.84, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1443812", "Number of Sequences": "570", "Longest Sequences (bp)": "18522", "N50 (bp)": "2526", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.6", "Number of CDSs": "1124", "Average Protein Length": "224.4", "Coding Ratio (%)": "52.4", "Number of rRNAs": "0", "Number of tRNAs": "14", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 71.64, "contamination": 0.84, "strain_heterogeneity": 50.0 }, "gtdb_result": [ { "accession": "GCA_011391755.1", "gtdb_species": "s__Methanothrix sp011391755", "ani": 90.0137, "matched_fragments": 83, "total_fragments": 137, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanotrichales;f__Methanotrichaceae;g__Methanothrix", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016927055.1", "gtdb_species": "s__Methanothrix sp016927055", "ani": 84.2399, "matched_fragments": 103, "total_fragments": 137, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanotrichales;f__Methanotrichaceae;g__Methanothrix", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002067705.1", "gtdb_species": "s__Methanothrix sp002067705", "ani": 81.5158, "matched_fragments": 98, "total_fragments": 137, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanotrichales;f__Methanotrichaceae;g__Methanothrix", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003857025.1", "gtdb_species": "s__Methanothrix sp003857025", "ani": 79.2977, "matched_fragments": 63, "total_fragments": 137, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanotrichales;f__Methanotrichaceae;g__Methanothrix", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017994055.1", "gtdb_species": "s__Methanothrix sp017994055", "ani": 78.9008, "matched_fragments": 55, "total_fragments": 137, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanotrichales;f__Methanotrichaceae;g__Methanothrix", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.015, "cell_length": 0.122, "doubling_h": 1.067, "growth_tmp": 35.781, "optimum_tmp": 36.373, "optimum_ph": 7.171, "genome_size": 3241894.319, "gc_content": 42.264, "coding_genes": 2973.655, "rRNA16S_genes": 2.562, "tRNA_genes": 52.005, "gram_stain": 0.066, "sporulation": 0.0, "motility": 0.064, "range_salinity": 0.75, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 0.8, "thermophilic_range_tmp": 0.2, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.108, "coccus_cell_shape": 0.891, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Archaea", "p__Halobacteriota", "c__Methanosarcinia", "o__Methanotrichales", "f__Methanotrichaceae", "g__Methanothrix", "s__Methanothrix sp026394555" ], "_genome_taxon": [ "uncultured", "Methanosarcinales", "archaeon", "d__Archaea", "p__Halobacteriota", "c__Methanosarcinia", "o__Methanotrichales", "f__Methanotrichaceae", "g__Methanothrix", "s__Methanothrix sp026394555", "Archaea", "Halobacteriota", "Methanosarcinia", "Methanotrichales", "Methanotrichaceae", "Methanothrix", "Methanothrix", "sp026394555" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000066", "label": "sediment" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }