{ "type": "genome", "identifier": "GCA_903852765.1", "organism": "uncultured Chlorobiaceae bacterium", "title": "uncultured Chlorobiaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903852765.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6946409", "wgs_master": "CAINRY000000000.1", "refseq_category": "na", "taxid": "243904", "species_taxid": "243904", "organism_name": "uncultured Chlorobiaceae bacterium", "infraspecific_name": "", "isolate": "KT2_bin-079", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/18", "asm_name": "freshwater MAG --- KT2_bin-079", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/852/765/GCA_903852765.1_freshwater_MAG_---_KT2_bin-079", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-18", "dateModified": "2020-07-18", "datePublished": "2020-07-18", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Chlorobiaceae bacterium" ], "sample_taxid": [ "243904" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "0.666 MB", "sample_ph_range": { "min": 6961.0, "max": 6961.0 }, "sample_temperature_range": { "min": 106.0, "max": 106.0 }, "completeness": 86.57, "contamination": 5.21, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2317567", "Number of Sequences": "404", "Longest Sequences (bp)": "38883", "N50 (bp)": "7467", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.8", "Number of CDSs": "1909", "Average Protein Length": "282.5", "Coding Ratio (%)": "69.8", "Number of rRNAs": "0", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pelodictyon phaeoclathratiforme", "strain": "strain=BU-1", "accession": "GCA_000020645.1", "taxid": 34090, "species_taxid": 34090, "relation_to_type": "type", "validated": true, "ani": 79.2113, "matched_fragments": 255, "total_fragments": 552, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chlorobium phaeobacteroides", "strain": "strain=DSM 266", "accession": "GCA_000015125.1", "taxid": 1096, "species_taxid": 1096, "relation_to_type": "type", "validated": true, "ani": 78.2499, "matched_fragments": 89, "total_fragments": 552, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chlorobium ferrooxidans", "strain": "strain=DSM 13031", "accession": "GCA_000168715.1", "taxid": 84205, "species_taxid": 84205, "relation_to_type": "type", "validated": true, "ani": 77.9462, "matched_fragments": 153, "total_fragments": 552, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chlorobium limicola", "strain": "strain=DSM 245", "accession": "GCA_000020465.1", "taxid": 1092, "species_taxid": 1092, "relation_to_type": "type", "validated": true, "ani": 76.8442, "matched_fragments": 73, "total_fragments": 552, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 86.57, "contamination": 5.21, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903994525.1", "gtdb_species": "s__Chlorobium sp903994525", "ani": 99.7959, "matched_fragments": 510, "total_fragments": 552, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.83", "min_intra_species_ani": "98.94", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.84", "num_clustered_genomes": 27, "status": "conclusive" }, { "accession": "GCA_903859055.1", "gtdb_species": "s__Chlorobium sp903859055", "ani": 88.9385, "matched_fragments": 428, "total_fragments": 552, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.70", "min_intra_species_ani": "99.65", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_903866255.1", "gtdb_species": "s__Chlorobium sp903866255", "ani": 85.7107, "matched_fragments": 388, "total_fragments": 552, "gtdb_taxonomy": 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