{ "type": "genome", "identifier": "GCA_903853015.1", "organism": "uncultured Geobacteraceae bacterium", "title": "uncultured Geobacteraceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903853015.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6949297", "wgs_master": "CAINSM000000000.1", "refseq_category": "na", "taxid": "214033", "species_taxid": "214033", "organism_name": "uncultured Geobacteraceae bacterium", "infraspecific_name": "", "isolate": "MJ130916B_bin-090", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/18", "asm_name": "freshwater MAG --- MJ130916B_bin-090", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/853/015/GCA_903853015.1_freshwater_MAG_---_MJ130916B_bin-090", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-18", "dateModified": "2020-07-18", "datePublished": "2020-07-18", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Geobacteraceae bacterium" ], "sample_taxid": [ "214033" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "0.734 MB", "sample_ph_range": { "min": 596.0, "max": 596.0 }, "sample_temperature_range": { "min": 648.0, "max": 648.0 }, "completeness": 71.12, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2549976", "Number of Sequences": "536", "Longest Sequences (bp)": "30061", "N50 (bp)": "6102", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.2", "Number of CDSs": "1994", "Average Protein Length": "295.9", "Coding Ratio (%)": "69.4", "Number of rRNAs": "1", "Number of tRNAs": "20", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Oryzomonas sagensis", "strain": "strain=Red100", "accession": "GCA_008802355.1", "taxid": 2603857, "species_taxid": 2603857, "relation_to_type": "type", "validated": true, "ani": 77.2946, "matched_fragments": 108, "total_fragments": 552, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oryzomonas rubra", "strain": "strain=Red88", "accession": "GCA_008369015.1", "taxid": 2509454, "species_taxid": 2509454, "relation_to_type": "type", "validated": true, "ani": 77.2534, "matched_fragments": 103, "total_fragments": 552, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelobacter propionicus", "strain": "strain=DSM 2379", "accession": "GCA_000015045.1", "taxid": 29543, "species_taxid": 29543, "relation_to_type": "type", "validated": true, "ani": 77.2247, "matched_fragments": 87, "total_fragments": 552, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oryzomonas japonica", "strain": "strain=Red96", "accession": "GCA_008802365.1", "taxid": 2603858, "species_taxid": 2603858, "relation_to_type": "type", "validated": true, "ani": 77.1963, "matched_fragments": 103, "total_fragments": 552, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geomonas agri", "strain": "strain=RG53", "accession": "GCA_020179605.1", "taxid": 2873702, "species_taxid": 2873702, "relation_to_type": "type", "validated": true, "ani": 76.7346, "matched_fragments": 53, "total_fragments": 552, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geobacter hydrogenophilus", "strain": "strain=DSM 13691", "accession": "GCA_018501225.1", "taxid": 40983, "species_taxid": 40983, "relation_to_type": "type", "validated": true, "ani": 76.6957, "matched_fragments": 55, "total_fragments": 552, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geomonas anaerohicana", "strain": "strain=Red421", "accession": "GCA_016458305.1", "taxid": 2798583, "species_taxid": 2798583, "relation_to_type": "type", "validated": true, "ani": 76.6203, "matched_fragments": 60, "total_fragments": 552, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geobacter benzoatilyticus", "strain": "strain=Jerry-YX", "accession": "GCA_017338855.1", "taxid": 2815309, "species_taxid": 2815309, "relation_to_type": "type", "validated": true, "ani": 76.6018, "matched_fragments": 53, "total_fragments": 552, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geobacter chapellei", "strain": "strain=DSM 13688", "accession": "GCA_018531195.1", "taxid": 44671, "species_taxid": 44671, "relation_to_type": "type", "validated": true, "ani": 76.5534, "matched_fragments": 64, "total_fragments": 552, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geomonas propionica", "strain": "strain=Red259", "accession": "GCA_016458235.1", "taxid": 2798582, "species_taxid": 2798582, "relation_to_type": "type", "validated": true, "ani": 76.5218, "matched_fragments": 52, "total_fragments": 552, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Trichlorobacter thiogenes", "strain": "strain=ATCC BAA-34", "accession": "GCA_900167465.1", "taxid": 115783, "species_taxid": 115783, "relation_to_type": "type", "validated": true, "ani": 76.5175, "matched_fragments": 54, "total_fragments": 552, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrifermentans pelophilum", "strain": "strain=DSM 12255", "accession": "GCA_018476885.1", "taxid": 60036, "species_taxid": 60036, "relation_to_type": "type", "validated": true, "ani": 76.4334, "matched_fragments": 54, "total_fragments": 552, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 71.12, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903852495.1", "gtdb_species": "s__JACRCG01 sp903852495", "ani": 99.8546, "matched_fragments": 539, "total_fragments": 552, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Pseudopelobacteraceae;g__JACRCG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.47", "min_intra_species_ani": "98.75", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.82", "num_clustered_genomes": 26, "status": "conclusive" }, { "accession": "GCA_903862245.1", "gtdb_species": "s__JACRCG01 sp903862245", "ani": 88.8409, "matched_fragments": 442, "total_fragments": 552, "gtdb_taxonomy": 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"d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Pseudopelobacteraceae;g__JACRCG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903875605.1", "gtdb_species": "s__JACRCG01 sp903875605", "ani": 77.8439, "matched_fragments": 177, "total_fragments": 552, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Pseudopelobacteraceae;g__JACRCG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.90", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_014380135.1", "gtdb_species": "s__JACRCG01 sp014380135", "ani": 77.3494, "matched_fragments": 128, "total_fragments": 552, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.076, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Desulfobacterota", "c__Desulfuromonadia", "o__Geobacterales", "f__Pseudopelobacteraceae", "g__JACRCG01", "s__JACRCG01 sp903852495" ], "_genome_taxon": [ "uncultured", "Geobacteraceae", "bacterium", "d__Bacteria", "p__Desulfobacterota", "c__Desulfuromonadia", "o__Geobacterales", "f__Pseudopelobacteraceae", "g__JACRCG01", "s__JACRCG01 sp903852495", "Bacteria", "Desulfobacterota", "Desulfuromonadia", "Geobacterales", "Pseudopelobacteraceae", "JACRCG01", "JACRCG01", "sp903852495" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }