{ "type": "genome", "identifier": "GCA_903853495.1", "organism": "uncultured Acidimicrobiaceae bacterium", "title": "uncultured Acidimicrobiaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903853495.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6951264", "wgs_master": "CAINTP000000000.1", "refseq_category": "na", "taxid": "410722", "species_taxid": "410722", "organism_name": "uncultured Acidimicrobiaceae bacterium", "infraspecific_name": "", "isolate": "VK2_bin-1652", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/18", "asm_name": "freshwater MAG --- VK2_bin-1652", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/853/495/GCA_903853495.1_freshwater_MAG_---_VK2_bin-1652", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-18", "dateModified": "2020-07-18", "datePublished": "2020-07-18", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Acidimicrobiaceae bacterium" ], "sample_taxid": [ "410722" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "0.721 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 14.0, "max": 14.0 }, "completeness": 100.0, "contamination": 0.52, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2615018", "Number of Sequences": "166", "Longest Sequences (bp)": "67947", "N50 (bp)": "26320", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.1", "Number of CDSs": "2296", "Average Protein Length": "324.6", "Coding Ratio (%)": "85.5", "Number of rRNAs": "0", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhabdothermincola salaria", "strain": "strain=EGI L10124", "accession": "GCA_021246445.1", "taxid": 2903142, "species_taxid": 2903142, "relation_to_type": "type", "validated": true, "ani": 76.5196, "matched_fragments": 129, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomarinicola tropica", "strain": "strain=SCSIO 58843", "accession": "GCA_009650215.1", "taxid": 2789776, "species_taxid": 2789776, "relation_to_type": "type", "validated": true, "ani": 76.2781, "matched_fragments": 99, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilumatobacter nonamiensis", "strain": "strain=YM16-303", "accession": "GCA_000350145.1", "taxid": 467093, "species_taxid": 467093, "relation_to_type": "type", "validated": true, "ani": 76.0775, "matched_fragments": 51, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilumatobacter coccineus", "strain": "strain=YM16-304", "accession": "GCA_000348785.1", "taxid": 467094, "species_taxid": 467094, "relation_to_type": "type", "validated": true, "ani": 76.0729, "matched_fragments": 65, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdothermincola sediminis", "strain": "strain=SYSU G02662", "accession": "GCA_014805525.1", "taxid": 2751370, "species_taxid": 2751370, "relation_to_type": "type", "validated": true, "ani": 75.9762, "matched_fragments": 81, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilumatobacter fluminis", "strain": "strain=DSM 18936", "accession": "GCA_004364865.1", "taxid": 467091, "species_taxid": 467091, "relation_to_type": "type", "validated": true, "ani": 75.911, "matched_fragments": 78, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertimonas flava", "strain": "strain=SYSU D60003", "accession": "GCA_003426815.1", "taxid": 2064846, "species_taxid": 2064846, "relation_to_type": "type", "validated": true, "ani": 75.5463, "matched_fragments": 96, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis composta", "strain": "strain=DSM 44551", "accession": "GCA_014200805.1", "taxid": 157465, "species_taxid": 157465, "relation_to_type": "type", "validated": true, "ani": 75.4173, "matched_fragments": 84, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"GCA_000423185.1", "taxid": 171674, "species_taxid": 171674, "relation_to_type": "type", "validated": true, "ani": 74.805, "matched_fragments": 60, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.52, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_903894295.1", "gtdb_species": "s__Bog-756 sp903894295", "ani": 99.7394, "matched_fragments": 733, "total_fragments": 787, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__Bog-756", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.67", "min_intra_species_ani": "99.55", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCA_003153575.1", "gtdb_species": "s__Bog-756 sp003153575", "ani": 78.8777, "matched_fragments": 267, "total_fragments": 787, "gtdb_taxonomy": 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