{ "type": "genome", "identifier": "GCA_903853635.1", "organism": "uncultured Rhodospirillales bacterium", "title": "uncultured Rhodospirillales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903853635.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6953466", "wgs_master": "CAINUD000000000.1", "refseq_category": "na", "taxid": "296830", "species_taxid": "296830", "organism_name": "uncultured Rhodospirillales bacterium", "infraspecific_name": "", "isolate": "Umea3p3_bin-0975", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/19", "asm_name": "freshwater MAG --- Umea3p3_bin-0975", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/853/635/GCA_903853635.1_freshwater_MAG_---_Umea3p3_bin-0975", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-19", "dateModified": "2020-07-19", "datePublished": "2020-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Rhodospirillales bacterium" ], "sample_taxid": [ "296830" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "0.971 MB", "sample_ph_range": { "min": 495.0, "max": 495.0 }, "sample_temperature_range": { "min": 41.0, "max": 41.0 }, "completeness": 73.25, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3444739", "Number of Sequences": "942", "Longest Sequences (bp)": "27274", "N50 (bp)": "4167", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.2", "Number of CDSs": "2568", "Average Protein Length": "280.3", "Coding Ratio (%)": "62.7", "Number of rRNAs": "0", "Number of tRNAs": "32", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Oceanibaculum pacificum", "strain": "strain=MCCC 1A02656", "accession": "GCA_001618175.1", "taxid": 580166, "species_taxid": 580166, "relation_to_type": "type", "validated": true, "ani": 76.1548, "matched_fragments": 62, "total_fragments": 631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum thermophilum", "strain": "strain=CFH 70021", "accession": "GCA_003130795.1", "taxid": 2202148, "species_taxid": 2202148, "relation_to_type": "type", "validated": true, "ani": 75.8844, "matched_fragments": 81, "total_fragments": 631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium aquaticum", "strain": "strain=DSM 16371", "accession": "GCA_001043915.1", "taxid": 270351, "species_taxid": 270351, "relation_to_type": "type", "validated": true, "ani": 75.3392, "matched_fragments": 57, "total_fragments": 631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas trueperi", "strain": "strain=DSM 7225", "accession": "GCA_011927635.1", "taxid": 53317, "species_taxid": 53317, "relation_to_type": "type", "validated": true, "ani": 75.2647, "matched_fragments": 53, "total_fragments": 631, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 73.25, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903822185.1", "gtdb_species": "s__CAIKMD01 sp903822185", "ani": 98.0392, "matched_fragments": 613, "total_fragments": 631, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__ATCC43930;f__Stellaceae;g__CAIKMD01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.70", "min_intra_species_ani": "99.51", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCA_903828515.1", "gtdb_species": "s__CAIKMD01 sp903828515", "ani": 79.0049, "matched_fragments": 343, "total_fragments": 631, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__ATCC43930;f__Stellaceae;g__CAIKMD01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.96", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_018971215.1", "gtdb_species": "s__REEB95 sp018971215", "ani": 76.7606, "matched_fragments": 102, "total_fragments": 631, "gtdb_taxonomy": 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