{ "type": "genome", "identifier": "GCA_903855535.1", "organism": "uncultured delta proteobacterium", "title": "uncultured delta proteobacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903855535.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6944744", "wgs_master": "CAINZI000000000.1", "refseq_category": "na", "taxid": "34034", "species_taxid": "34034", "organism_name": "uncultured delta proteobacterium", "infraspecific_name": "", "isolate": "AM-2014-D5_bin-366", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/19", "asm_name": "freshwater MAG --- AM-2014-D5_bin-366", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/855/535/GCA_903855535.1_freshwater_MAG_---_AM-2014-D5_bin-366", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-19", "dateModified": "2020-07-19", "datePublished": "2020-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured delta proteobacterium" ], "sample_taxid": [ "34034" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "0.986 MB", "sample_ph_range": { "min": 592.0, "max": 592.0 }, "sample_temperature_range": { "min": 5.0, "max": 5.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3567050", "Number of Sequences": "94", "Longest Sequences (bp)": "199704", "N50 (bp)": "62837", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.0", "Number of CDSs": "3176", "Average Protein Length": "326.0", "Coding Ratio (%)": "87.1", "Number of rRNAs": "1", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudodesulfovibrio mercurii", "strain": "strain=ND132", "accession": "GCA_000189295.2", "taxid": 641491, "species_taxid": 641491, "relation_to_type": "type", "validated": true, "ani": 78.3523, "matched_fragments": 400, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paucidesulfovibrio longus", "strain": "strain=DSM 6739", "accession": "GCA_000420485.1", "taxid": 889, "species_taxid": 889, "relation_to_type": "type", "validated": true, "ani": 78.3236, "matched_fragments": 345, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio indicus", "strain": "strain=DSM 101483", "accession": "GCA_004365595.1", "taxid": 1716143, "species_taxid": 1716143, "relation_to_type": "type", "validated": true, "ani": 78.2977, "matched_fragments": 367, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio indicus", "strain": "strain=J2", "accession": "GCA_001563225.1", "taxid": 1716143, "species_taxid": 1716143, "relation_to_type": "type", "validated": true, "ani": 78.2402, "matched_fragments": 371, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio hydrargyri", "strain": "strain=BerOc1", "accession": "GCA_001874525.1", "taxid": 2125990, "species_taxid": 2125990, "relation_to_type": "type", "validated": true, "ani": 78.145, "matched_fragments": 378, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fundidesulfovibrio putealis", "strain": "strain=DSM 16056", "accession": "GCA_000429325.1", "taxid": 270496, "species_taxid": 270496, "relation_to_type": "type", "validated": true, "ani": 77.867, "matched_fragments": 346, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fundidesulfovibrio magnetotacticus", "strain": "strain=FSS-1", "accession": "GCA_013019105.1", "taxid": 2730080, "species_taxid": 2730080, "relation_to_type": "type", "validated": true, "ani": 77.7296, "matched_fragments": 385, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupidesulfovibrio liaohensis", "strain": "strain=XJ01", "accession": "GCA_011682075.1", "taxid": 2604158, "species_taxid": 2604158, "relation_to_type": "type", "validated": true, "ani": 77.7247, "matched_fragments": 261, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio alkaliphilus", "strain": "strain=F-1", "accession": "GCA_009729555.1", "taxid": 2661613, "species_taxid": 2661613, "relation_to_type": "type", "validated": true, "ani": 77.6876, "matched_fragments": 257, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfohalovibrio alkalitolerans", "strain": "strain=DSM 16529", "accession": "GCA_000422245.1", "taxid": 293256, "species_taxid": 293256, "relation_to_type": "type", "validated": true, "ani": 77.5322, "matched_fragments": 287, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfohalovibrio reitneri", "strain": "strain=L21-Syr-AB", "accession": "GCA_000711295.1", "taxid": 1307759, "species_taxid": 1307759, "relation_to_type": "type", "validated": true, "ani": 77.5315, "matched_fragments": 277, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupidesulfovibrio termitidis", "strain": "strain=HI1", "accession": "GCA_000504305.1", "taxid": 42252, "species_taxid": 42252, "relation_to_type": "type", "validated": true, "ani": 77.4739, "matched_fragments": 318, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solidesulfovibrio alcoholivorans", "strain": "strain=DSM 5433", "accession": "GCA_000702665.1", "taxid": 81406, "species_taxid": 81406, "relation_to_type": "type", "validated": true, "ani": 77.4328, "matched_fragments": 339, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfocurvibacter africanus subsp. africanus", "strain": "strain=DSM 2603", "accession": "GCA_000422545.1", "taxid": 1511600, "species_taxid": 873, "relation_to_type": "type", "validated": true, "ani": 77.393, "matched_fragments": 254, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio cashew", "strain": "strain=SRB007", "accession": "GCA_009762795.1", "taxid": 2678688, "species_taxid": 2678688, "relation_to_type": "type", "validated": true, "ani": 77.3606, "matched_fragments": 278, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium amazonense", "strain": "strain=DSM 26508", "accession": "GCA_001855565.1", "taxid": 1382803, "species_taxid": 1382803, "relation_to_type": "type", "validated": true, "ani": 75.4792, "matched_fragments": 51, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium sinusclupearum", "strain": "strain=MWU13-2610", "accession": "GCA_002902845.1", "taxid": 2077146, "species_taxid": 2077146, "relation_to_type": "type", "validated": true, "ani": 75.3763, "matched_fragments": 60, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium vaccinii", "strain": "strain=MWU205", "accession": 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