{
    "type": "genome",
    "identifier": "GCA_903856455.1",
    "organism": "uncultured Gemmatimonadota bacterium",
    "title": "uncultured Gemmatimonadota bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "BILS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_903856455.1",
        "bioproject": "PRJEB38681",
        "biosample": "SAMEA6945878",
        "wgs_master": "CAIOBZ000000000.1",
        "refseq_category": "na",
        "taxid": "203437",
        "species_taxid": "203437",
        "organism_name": "uncultured Gemmatimonadota bacterium",
        "infraspecific_name": "",
        "isolate": "KR2_bin-0125",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/19",
        "asm_name": "freshwater MAG --- KR2_bin-0125",
        "submitter": "BILS",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/856/455/GCA_903856455.1_freshwater_MAG_---_KR2_bin-0125",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-19",
    "dateModified": "2020-07-19",
    "datePublished": "2020-07-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Gemmatimonadota bacterium"
        ],
        "sample_taxid": [
            "203437"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Finland"
        ],
        "sample_host_location_id": [],
        "data_size": "0.902 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 122.0,
            "max": 122.0
        },
        "completeness": 100.0,
        "contamination": 1.22,
        "strain_heterogeneity": 66.67,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3221374",
        "Number of Sequences": "231",
        "Longest Sequences (bp)": "131410",
        "N50 (bp)": "24787",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "62.7",
        "Number of CDSs": "2762",
        "Average Protein Length": "336.5",
        "Coding Ratio (%)": "86.6",
        "Number of rRNAs": "1",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Gemmatimonas aurantiaca",
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                "accession": "GCA_000010305.1",
                "taxid": 173480,
                "species_taxid": 173480,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6317,
                "matched_fragments": 75,
                "total_fragments": 955,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmatimonas phototrophica",
                "strain": "strain=AP64",
                "accession": "GCA_000695095.2",
                "taxid": 1379270,
                "species_taxid": 1379270,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5233,
                "matched_fragments": 69,
                "total_fragments": 955,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmatimonas groenlandica",
                "strain": "strain=TET16",
                "accession": "GCA_013004105.1",
                "taxid": 2732249,
                "species_taxid": 2732249,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3743,
                "matched_fragments": 107,
                "total_fragments": 955,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmatirosa kalamazoonensis",
                "strain": "strain=KBS708",
                "accession": "GCA_000522985.1",
                "taxid": 861299,
                "species_taxid": 861299,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.971,
                "matched_fragments": 219,
                "total_fragments": 955,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Longimicrobium terrae",
                "strain": "strain=CB-286315",
                "accession": "GCA_013000925.1",
                "taxid": 1639882,
                "species_taxid": 1639882,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.1657,
                "matched_fragments": 60,
                "total_fragments": 955,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sandaracinus amylolyticus",
                "strain": "strain=DSM 53668",
                "accession": "GCA_000737325.2",
                "taxid": 927083,
                "species_taxid": 927083,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6957,
                "matched_fragments": 145,
                "total_fragments": 955,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 1.22,
            "strain_heterogeneity": 66.67
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        "gtdb_result": [
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                "accession": "GCA_903910555.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__Fen-1231",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.81",
                "min_intra_species_ani": "99.24",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
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                "accession": "GCA_017881585.1",
                "gtdb_species": "s__Fen-1231 sp017881585",
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                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__Fen-1231",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003171215.1",
                "gtdb_species": "s__Fen-1231 sp003171215",
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                "matched_fragments": 618,
                "total_fragments": 955,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__Fen-1231",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.59",
                "min_intra_species_ani": "95.49",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_016194585.1",
                "gtdb_species": "s__Fen-1231 sp016194585",
                "ani": 77.6068,
                "matched_fragments": 253,
                "total_fragments": 955,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__Fen-1231",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.33",
                "min_intra_species_ani": "99.33",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903882745.1",
                "gtdb_species": "s__Fen-1231 sp903882745",
                "ani": 77.1634,
                "matched_fragments": 182,
                "total_fragments": 955,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__Fen-1231",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.53",
                "min_intra_species_ani": "99.21",
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                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCA_016714015.1",
                "gtdb_species": "s__PNKF01 sp016714015",
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                "matched_fragments": 198,
                "total_fragments": 955,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__PNKF01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016874035.1",
                "gtdb_species": "s__Fen-1231 sp016874035",
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                "matched_fragments": 148,
                "total_fragments": 955,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__Fen-1231",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016182795.1",
                "gtdb_species": "s__PNKL01 sp016182795",
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                "matched_fragments": 142,
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                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__PNKL01",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_016871915.1",
                "gtdb_species": "s__PNKF01 sp016871915",
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                "matched_fragments": 111,
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                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__PNKF01",
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                "mean_intra_species_ani": "99.71",
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            },
            {
                "accession": "GCA_016871855.1",
                "gtdb_species": "s__PNKL01 sp016871855",
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            {
                "accession": "GCA_902825965.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_016794835.1",
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                "matched_fragments": 51,
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
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        "p__Gemmatimonadota",
        "c__Gemmatimonadetes",
        "o__Gemmatimonadales",
        "f__Gemmatimonadaceae",
        "g__Fen-1231",
        "s__Fen-1231 sp903910555"
    ],
    "_genome_taxon": [
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        "bacterium",
        "d__Bacteria",
        "p__Gemmatimonadota",
        "c__Gemmatimonadetes",
        "o__Gemmatimonadales",
        "f__Gemmatimonadaceae",
        "g__Fen-1231",
        "s__Fen-1231 sp903910555",
        "Bacteria",
        "Gemmatimonadota",
        "Gemmatimonadetes",
        "Gemmatimonadales",
        "Gemmatimonadaceae",
        "Fen-1231",
        "Fen-1231",
        "sp903910555"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}