{ "type": "genome", "identifier": "GCA_903856515.1", "organism": "uncultured Alphaproteobacteria bacterium", "title": "uncultured Alphaproteobacteria bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903856515.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6946073", "wgs_master": "CAIOCD000000000.1", "refseq_category": "na", "taxid": "91750", "species_taxid": "91750", "organism_name": "uncultured Alphaproteobacteria bacterium", "infraspecific_name": "", "isolate": "LinL5_bin-0142", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/16", "asm_name": "freshwater MAG --- LinL5_bin-0142", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/856/515/GCA_903856515.1_freshwater_MAG_---_LinL5_bin-0142", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-16", "dateModified": "2020-07-16", "datePublished": "2020-07-16", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Alphaproteobacteria bacterium" ], "sample_taxid": [ "91750" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "0.173 MB", "sample_ph_range": { "min": 67.0, "max": 67.0 }, "sample_temperature_range": { "min": 11.0, "max": 11.0 }, "completeness": 48.55, "contamination": 0.9, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "613064", "Number of Sequences": "217", "Longest Sequences (bp)": "15140", "N50 (bp)": "2978", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "30.7", "Number of CDSs": "481", "Average Protein Length": "249.8", "Coding Ratio (%)": "58.8", "Number of rRNAs": "0", "Number of tRNAs": "7", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 48.55, "contamination": 0.9, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_000419465.1", "gtdb_species": "s__Fonsibacter sp000419465", "ani": 83.454, "matched_fragments": 53, "total_fragments": 78, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Fonsibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018882565.1", "gtdb_species": "s__Fonsibacter sp018882565", "ani": 83.35, "matched_fragments": 62, "total_fragments": 78, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Fonsibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.85", "min_intra_species_ani": "95.99", "mean_intra_species_af": "0.76", "min_intra_species_af": "0.70", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_000510845.1", "gtdb_species": "s__Fonsibacter sp000510845", "ani": 83.0988, "matched_fragments": 54, "total_fragments": 78, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Fonsibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.98", "min_intra_species_ani": "95.03", "mean_intra_species_af": "0.69", "min_intra_species_af": "0.68", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_010021145.1", "gtdb_species": "s__Fonsibacter lacus_A", "ani": 82.8391, "matched_fragments": 54, "total_fragments": 78, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Fonsibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.30", "min_intra_species_ani": "99.10", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.79", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_018658635.1", "gtdb_species": "s__Fonsibacter sp018658635", "ani": 82.3523, "matched_fragments": 59, "total_fragments": 78, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Fonsibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002688585.1", "gtdb_species": "s__Fonsibacter ubiquis", "ani": 81.5154, "matched_fragments": 69, "total_fragments": 78, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Fonsibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.79", "min_intra_species_ani": "97.41", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.94", "num_clustered_genomes": 23, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Pelagibacterales", "f__Pelagibacteraceae", "g__Fonsibacter", "s__" ], "_genome_taxon": [ "uncultured", "Alphaproteobacteria", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Pelagibacterales", "f__Pelagibacteraceae", "g__Fonsibacter", "s__", "Bacteria", "Pseudomonadota", "Alphaproteobacteria", "Pelagibacterales", "Pelagibacteraceae", "Fonsibacter", "s", "", "" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }