{ "type": "genome", "identifier": "GCA_903862045.1", "organism": "uncultured Burkholderiales bacterium", "title": "uncultured Burkholderiales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903862045.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6949713", "wgs_master": "CAIOWT000000000.1", "refseq_category": "na", "taxid": "208544", "species_taxid": "208544", "organism_name": "uncultured Burkholderiales bacterium", "infraspecific_name": "", "isolate": "LinL3_bin-0184", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/18", "asm_name": "freshwater MAG --- LinL3_bin-0184", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/862/045/GCA_903862045.1_freshwater_MAG_---_LinL3_bin-0184", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-18", "dateModified": "2020-07-18", "datePublished": "2020-07-18", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Burkholderiales bacterium" ], "sample_taxid": [ "208544" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "0.805 MB", "sample_ph_range": { "min": 68.0, "max": 68.0 }, "sample_temperature_range": { "min": 7.0, "max": 7.0 }, "completeness": 38.43, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2845038", "Number of Sequences": "1064", "Longest Sequences (bp)": "13696", "N50 (bp)": "2707", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.8", "Number of CDSs": "1820", "Average Protein Length": "265.8", "Coding Ratio (%)": "51.0", "Number of rRNAs": "0", "Number of tRNAs": "13", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paucibacter toxinivorans", "strain": "strain=DSM 16998", "accession": "GCA_004362525.1", "taxid": 270368, "species_taxid": 270368, "relation_to_type": "type", "validated": true, "ani": 78.2684, "matched_fragments": 91, "total_fragments": 323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mitsuaria chitinivorans", "strain": "strain=HWN-4", "accession": "GCA_002761755.1", "taxid": 2917965, "species_taxid": 2917965, "relation_to_type": "type", "validated": true, "ani": 78.0215, "matched_fragments": 68, "total_fragments": 323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelomonas saccharophila", "strain": "strain=DSM 654", "accession": "GCA_004342485.1", "taxid": 304, "species_taxid": 304, "relation_to_type": "type", "validated": true, "ani": 77.4745, "matched_fragments": 75, "total_fragments": 323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelomonas puraquae", "strain": "strain=CCUG 52769", "accession": "GCA_002205845.1", "taxid": 431059, "species_taxid": 431059, "relation_to_type": "type", "validated": true, "ani": 77.4316, "matched_fragments": 59, "total_fragments": 323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivivax gelatinosus", "strain": "strain=DSM 1709", "accession": "GCA_016583525.1", "taxid": 28068, "species_taxid": 28068, "relation_to_type": "suspected-type", "validated": true, "ani": 77.4109, "matched_fragments": 62, "total_fragments": 323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivivax gelatinosus", "strain": "strain=DSM 1709", "accession": "GCA_004340905.1", "taxid": 28068, "species_taxid": 28068, "relation_to_type": "suspected-type", "validated": true, "ani": 77.3893, "matched_fragments": 62, "total_fragments": 323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivivax benzoatilyticus", "strain": "strain=JA2", "accession": "GCA_000190375.2", "taxid": 316997, "species_taxid": 316997, "relation_to_type": "type", "validated": true, "ani": 77.3614, "matched_fragments": 66, "total_fragments": 323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus natans", "strain": "strain=ATCC 13338", "accession": "GCA_900156335.1", "taxid": 34103, "species_taxid": 34103, "relation_to_type": "type", "validated": true, "ani": 77.3593, "matched_fragments": 64, "total_fragments": 323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivivax benzoatilyticus", "strain": "strain=JA2", "accession": "GCA_000420125.1", "taxid": 316997, "species_taxid": 316997, "relation_to_type": "type", "validated": true, "ani": 77.3173, "matched_fragments": 68, "total_fragments": 323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella thermodepolymerans", "strain": "strain=DSM 15344", "accession": "GCA_015476235.1", "taxid": 215580, "species_taxid": 215580, "relation_to_type": "type", "validated": true, "ani": 77.0675, "matched_fragments": 51, "total_fragments": 323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella dechloratans", "strain": "strain=CCUG 30977", "accession": "GCA_021049305.1", "taxid": 36863, "species_taxid": 36863, "relation_to_type": "type", "validated": true, "ani": 76.966, "matched_fragments": 56, "total_fragments": 323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseateles terrae", "strain": "strain=CECT 7247", "accession": "GCA_014192155.1", "taxid": 431060, "species_taxid": 431060, "relation_to_type": "type", "validated": true, "ani": 76.9439, "matched_fragments": 58, "total_fragments": 323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseateles depolymerans", "strain": "strain=DSM 11813", "accession": "GCA_003387155.1", "taxid": 76731, "species_taxid": 76731, "relation_to_type": "type", "validated": true, "ani": 76.9225, "matched_fragments": 57, "total_fragments": 323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella brevitalea", "strain": "strain=DSM 7029", "accession": "GCA_001017435.1", "taxid": 413882, "species_taxid": 413882, "relation_to_type": "type", "validated": true, "ani": 76.6585, "matched_fragments": 57, "total_fragments": 323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azohydromonas aeria", "strain": "strain=CFCC 13393", "accession": "GCA_009760915.1", "taxid": 2590212, "species_taxid": 2590212, 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