{ "type": "genome", "identifier": "GCA_903862085.1", "organism": "uncultured Sphingomonadales bacterium", "title": "uncultured Sphingomonadales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903862085.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6949844", "wgs_master": "CAIOWP000000000.1", "refseq_category": "na", "taxid": "293405", "species_taxid": "293405", "organism_name": "uncultured Sphingomonadales bacterium", "infraspecific_name": "", "isolate": "AM-lipid-02-D4_bin-0854", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/19", "asm_name": "freshwater MAG --- AM-lipid-02-D4_bin-0854", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/862/085/GCA_903862085.1_freshwater_MAG_---_AM-lipid-02-D4_bin-0854", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-19", "dateModified": "2020-07-19", "datePublished": "2020-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Sphingomonadales bacterium" ], "sample_taxid": [ "293405" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "1.057 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 84.0, "max": 84.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3848189", "Number of Sequences": "35", "Longest Sequences (bp)": "740994", "N50 (bp)": "196427", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.3", "Number of CDSs": "3489", "Average Protein Length": "336.0", "Coding Ratio (%)": "91.4", "Number of rRNAs": "0", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Novosphingobium acidiphilum", "strain": "strain=DSM 19966", "accession": "GCA_000429005.1", "taxid": 505248, "species_taxid": 505248, "relation_to_type": "type", "validated": true, "ani": 98.9554, "matched_fragments": 1087, "total_fragments": 1264, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Novosphingobium nitrogenifigens", "strain": "strain=DSM 19370", "accession": "GCA_000192575.1", "taxid": 378548, "species_taxid": 378548, "relation_to_type": "type", "validated": true, "ani": 79.563, "matched_fragments": 568, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium nitrogenifigens", "strain": "strain=DSM 19370", "accession": "GCA_000375445.1", "taxid": 378548, "species_taxid": 378548, "relation_to_type": "type", "validated": true, "ani": 79.5061, "matched_fragments": 570, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium pokkalii", "strain": "strain=KCTC 42224", "accession": "GCA_014652855.1", "taxid": 1770194, "species_taxid": 1770194, "relation_to_type": "type", "validated": true, "ani": 79.496, "matched_fragments": 553, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium capsulatum", "strain": "strain=NBRC 12533", "accession": "GCA_001598375.1", "taxid": 13688, "species_taxid": 13688, "relation_to_type": "type", "validated": true, "ani": 79.4226, "matched_fragments": 558, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium percolationis", "strain": "strain=c1", "accession": "GCA_020179425.1", "taxid": 2871811, "species_taxid": 2871811, "relation_to_type": "type", "validated": true, "ani": 79.2505, "matched_fragments": 504, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium huizhouense", "strain": "strain=c7", "accession": "GCA_020179475.1", "taxid": 2866625, "species_taxid": 2866625, "relation_to_type": "type", "validated": true, "ani": 78.6815, "matched_fragments": 478, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium hassiacum", "strain": "strain=DSM 14552", "accession": "GCA_014196055.1", "taxid": 173676, "species_taxid": 173676, "relation_to_type": "type", "validated": true, "ani": 78.6259, "matched_fragments": 403, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium arvoryzae", "strain": "strain=KCTC 32422", "accession": "GCA_014652615.1", "taxid": 1256514, "species_taxid": 1256514, "relation_to_type": "type", "validated": true, "ani": 78.6095, "matched_fragments": 423, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium meiothermophilum", "strain": "strain=SYSU G00007", "accession": "GCA_003171715.1", "taxid": 2202251, "species_taxid": 2202251, "relation_to_type": "type", "validated": true, "ani": 78.3494, "matched_fragments": 417, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium jiangmenense", "strain": "strain=1Y9A", "accession": "GCA_015694345.1", "taxid": 2791981, "species_taxid": 2791981, "relation_to_type": "type", "validated": true, "ani": 78.3197, "matched_fragments": 399, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium subterraneum", "strain": "strain=DSM 12447", "accession": "GCA_000807925.1", "taxid": 48936, "species_taxid": 48936, "relation_to_type": "type", "validated": true, "ani": 78.0467, "matched_fragments": 380, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium umbonatum", "strain": "strain=FSY-9", "accession": "GCA_004005905.1", "taxid": 1908524, "species_taxid": 1908524, "relation_to_type": "type", "validated": true, "ani": 77.9718, "matched_fragments": 324, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium aquimarinum", "strain": "strain=M24A2M", "accession": "GCA_009746585.1", "taxid": 2682494, "species_taxid": 2682494, "relation_to_type": "type", "validated": true, "ani": 77.6245, "matched_fragments": 252, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium decolorationis", "strain": "strain=502str22", "accession": "GCA_018417475.1", "taxid": 2698673, "species_taxid": 2698673, "relation_to_type": "type", "validated": true, "ani": 77.1704, "matched_fragments": 261, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000429005.1", "gtdb_species": "s__Novosphingobium acidiphilum", "ani": 98.9554, "matched_fragments": 1087, "total_fragments": 1264, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Novosphingobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.82", "min_intra_species_ani": "98.58", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.82", "num_clustered_genomes": 13, "status": "conclusive" }, { "accession": "GCF_001519065.1", "gtdb_species": "s__Novosphingobium sp001519065", "ani": 83.8845, "matched_fragments": 918, "total_fragments": 1264, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Novosphingobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903832325.1", "gtdb_species": "s__Novosphingobium sp903832325", "ani": 83.6318, "matched_fragments": 901, "total_fragments": 1264, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Novosphingobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.94", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.96", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001519055.1", "gtdb_species": "s__Novosphingobium sp001519055", "ani": 82.1024, 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