{ "type": "genome", "identifier": "GCA_903862325.1", "organism": "uncultured Acidobacteriaceae bacterium", "title": "uncultured Acidobacteriaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903862325.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6951522", "wgs_master": "CAIOYA000000000.1", "refseq_category": "na", "taxid": "194844", "species_taxid": "194844", "organism_name": "uncultured Acidobacteriaceae bacterium", "infraspecific_name": "", "isolate": "AM-2014-D8_bin-0350", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/20", "asm_name": "freshwater MAG --- AM-2014-D8_bin-0350", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/862/325/GCA_903862325.1_freshwater_MAG_---_AM-2014-D8_bin-0350", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-20", "dateModified": "2020-07-20", "datePublished": "2020-07-20", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Acidobacteriaceae bacterium" ], "sample_taxid": [ "194844" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "1.746 MB", "sample_ph_range": { "min": 609.0, "max": 609.0 }, "sample_temperature_range": { "min": 45.0, "max": 45.0 }, "completeness": 96.84, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "6087698", "Number of Sequences": "743", "Longest Sequences (bp)": "58764", "N50 (bp)": "12110", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.5", "Number of CDSs": "4533", "Average Protein Length": "328.7", "Coding Ratio (%)": "73.4", "Number of rRNAs": "0", "Number of tRNAs": "60", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Occallatibacter riparius", "strain": "strain=DSM 25168", "accession": "GCA_025264625.1", "taxid": 1002689, "species_taxid": 1002689, "relation_to_type": "type", "validated": true, "ani": 77.2418, "matched_fragments": 231, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Terracidiphilus gabretensis", "strain": "strain=S55", "accession": "GCA_001449115.1", "taxid": 1577687, "species_taxid": 1577687, "relation_to_type": "type", "validated": true, "ani": 76.6868, "matched_fragments": 167, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidobacterium capsulatum", "strain": "strain=ATCC 51196", "accession": "GCA_000022565.1", "taxid": 33075, "species_taxid": 33075, "relation_to_type": "type", "validated": true, "ani": 76.4065, "matched_fragments": 119, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silvibacterium bohemicum", "strain": "strain=DSM 103733", "accession": "GCA_014201455.1", "taxid": 1577686, "species_taxid": 1577686, "relation_to_type": "type", "validated": true, "ani": 76.3836, "matched_fragments": 123, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silvibacterium dinghuense", "strain": "strain=DHOF10", "accession": "GCA_004123295.1", "taxid": 1560006, "species_taxid": 1560006, "relation_to_type": "type", "validated": true, "ani": 76.3163, "matched_fragments": 119, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Edaphobacter lichenicola", "strain": "strain=DSM 104462", "accession": "GCA_025264645.1", "taxid": 2051959, "species_taxid": 2051959, "relation_to_type": "suspected-type", "validated": true, "ani": 76.2979, "matched_fragments": 60, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silvibacterium dinghuense", "strain": "strain=CGMCC 1.13007", "accession": "GCA_014640355.1", "taxid": 1560006, "species_taxid": 1560006, "relation_to_type": "type", "validated": true, "ani": 76.28, "matched_fragments": 120, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracidobacterium acidisoli", "strain": "strain=4G-K13", "accession": "GCA_003428625.2", "taxid": 2303751, "species_taxid": 2303751, "relation_to_type": "type", "validated": true, "ani": 76.2453, "matched_fragments": 136, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidipila rosea", "strain": "strain=DSM 103428", "accession": "GCA_004339725.1", "taxid": 768535, "species_taxid": 768535, "relation_to_type": "type", "validated": true, "ani": 76.2326, "matched_fragments": 85, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alloacidobacterium dinghuense", "strain": "strain=4Y35", "accession": "GCA_014274465.1", "taxid": 2763107, "species_taxid": 2763107, "relation_to_type": "type", "validated": true, "ani": 76.1621, "matched_fragments": 88, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Edaphobacter dinghuensis", "strain": "strain=CGMCC 1.12997", "accession": "GCA_014640335.1", "taxid": 1560005, "species_taxid": 1560005, "relation_to_type": "type", "validated": true, "ani": 76.0515, "matched_fragments": 77, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Granulicella sibirica", "strain": "strain=AF10", "accession": "GCA_004115155.1", "taxid": 2479048, "species_taxid": 2479048, "relation_to_type": "type", "validated": true, "ani": 76.0176, "matched_fragments": 68, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 96.84, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903828675.1", "gtdb_species": "s__Terracidiphilus sp903828675", "ani": 99.9084, "matched_fragments": 1599, "total_fragments": 1640, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Terracidiphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.87", "min_intra_species_ani": "99.75", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCA_003170825.1", "gtdb_species": "s__Terracidiphilus sp003170825", "ani": 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"Acidobacteriota", "Terriglobia", "Terriglobales", "Acidobacteriaceae", "Occallatibacter", "Occallatibacter", "sp903828675" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }