{ "type": "genome", "identifier": "GCA_903866715.1", "organism": "uncultured Chlorobiaceae bacterium", "title": "uncultured Chlorobiaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903866715.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6956118", "wgs_master": "CAIPOP000000000.1", "refseq_category": "na", "taxid": "243904", "species_taxid": "243904", "organism_name": "uncultured Chlorobiaceae bacterium", "infraspecific_name": "", "isolate": "LaPlata-a_bin-2075", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/18", "asm_name": "freshwater MAG --- LaPlata-a_bin-2075", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/866/715/GCA_903866715.1_freshwater_MAG_---_LaPlata-a_bin-2075", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-18", "dateModified": "2020-07-18", "datePublished": "2020-07-18", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Chlorobiaceae bacterium" ], "sample_taxid": [ "243904" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Puerto Rico" ], "sample_host_location_id": [], "data_size": "0.711 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 1.77, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2494003", "Number of Sequences": "190", "Longest Sequences (bp)": "92943", "N50 (bp)": "23784", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.2", "Number of CDSs": "2113", "Average Protein Length": "306.1", "Coding Ratio (%)": "77.8", "Number of rRNAs": "0", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pelodictyon luteolum", "strain": "strain=DSM 273", "accession": "GCA_000012485.1", "taxid": 1100, "species_taxid": 1100, "relation_to_type": "type", "validated": true, "ani": 77.5865, "matched_fragments": 153, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chlorobaculum thiosulfatiphilum", "strain": "strain=DSM 249", "accession": "GCA_006265165.1", "taxid": 115852, "species_taxid": 115852, "relation_to_type": "type", "validated": true, "ani": 77.4191, "matched_fragments": 146, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chlorobaculum limnaeum", "strain": "strain=DSM 1677", "accession": "GCA_001747405.1", "taxid": 274537, "species_taxid": 274537, "relation_to_type": "type", "validated": true, "ani": 77.4096, "matched_fragments": 157, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chlorobaculum tepidum", "strain": "strain=TLS", "accession": "GCA_000006985.1", "taxid": 1097, "species_taxid": 1097, "relation_to_type": "type", "validated": true, "ani": 77.2706, "matched_fragments": 131, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chlorobium limicola", "strain": "strain=DSM 245", "accession": "GCA_000020465.1", "taxid": 1092, "species_taxid": 1092, "relation_to_type": "type", "validated": true, "ani": 77.2293, "matched_fragments": 165, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chlorobium phaeobacteroides", "strain": "strain=DSM 266", "accession": "GCA_000015125.1", "taxid": 1096, "species_taxid": 1096, "relation_to_type": "type", "validated": true, "ani": 76.9939, "matched_fragments": 92, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chlorobium ferrooxidans", "strain": "strain=DSM 13031", "accession": "GCA_000168715.1", "taxid": 84205, "species_taxid": 84205, "relation_to_type": "type", "validated": true, "ani": 76.8246, "matched_fragments": 125, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelodictyon phaeoclathratiforme", "strain": "strain=BU-1", "accession": "GCA_000020645.1", "taxid": 34090, "species_taxid": 34090, "relation_to_type": "type", "validated": true, "ani": 76.7833, "matched_fragments": 112, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prosthecochloris vibrioformis", "strain": "strain=DSM 260", "accession": "GCA_006265245.1", "taxid": 1098, "species_taxid": 1098, "relation_to_type": "type", "validated": true, "ani": 76.6287, "matched_fragments": 69, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 1.77, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_903928225.1", "gtdb_species": "s__Chlorobium sp903928225", "ani": 99.781, "matched_fragments": 669, "total_fragments": 727, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.78", "min_intra_species_ani": "99.75", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCA_013334565.1", "gtdb_species": "s__Chlorobium sp013334565", "ani": 92.9887, "matched_fragments": 539, "total_fragments": 727, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013334225.1", "gtdb_species": "s__Chlorobium sp013334225", "ani": 82.1427, "matched_fragments": 358, "total_fragments": 727, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013335405.1", "gtdb_species": "s__Chlorobium sp013335405", "ani": 80.7777, "matched_fragments": 432, "total_fragments": 727, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.91", "min_intra_species_ani": "99.91", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_005862285.1", "gtdb_species": "s__Chlorobium sp005862285", "ani": 79.2648, "matched_fragments": 335, "total_fragments": 727, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013334865.1", "gtdb_species": "s__Chlorobaculum sp013334865", "ani": 78.0042, "matched_fragments": 162, "total_fragments": 727, "gtdb_taxonomy": 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"coding_genes": 2296.574, "rRNA16S_genes": 1.888, "tRNA_genes": 47.944, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 1.0, "facultative_respiration": 0.3, "anaerobic_respiration": 0.7, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 0.888, "thermophilic_range_tmp": 0.111, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.888, "coccus_cell_shape": 0.111, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Chlorobiia", "o__Chlorobiales", "f__Chlorobiaceae", "g__Chlorobium", "s__Chlorobium sp903928225" ], "_genome_taxon": [ "uncultured", "Chlorobiaceae", "bacterium", "d__Bacteria", "p__Bacteroidota", "c__Chlorobiia", "o__Chlorobiales", "f__Chlorobiaceae", "g__Chlorobium", "s__Chlorobium sp903928225", "Bacteria", "Bacteroidota", "Chlorobiia", "Chlorobiales", "Chlorobiaceae", "Chlorobium", "Chlorobium", "sp903928225" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }