{ "type": "genome", "identifier": "GCA_903866915.1", "organism": "uncultured Mucilaginibacter sp.", "title": "uncultured Mucilaginibacter sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903866915.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6943560", "wgs_master": "CAIPPO000000000.1", "refseq_category": "na", "taxid": "797541", "species_taxid": "797541", "organism_name": "uncultured Mucilaginibacter sp.", "infraspecific_name": "", "isolate": "AM-lipid-02-D3_bin-0192", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/19", "asm_name": "freshwater MAG --- AM-lipid-02-D3_bin-0192", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/866/915/GCA_903866915.1_freshwater_MAG_---_AM-lipid-02-D3_bin-0192", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-19", "dateModified": "2020-07-19", "datePublished": "2020-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Mucilaginibacter sp." ], "sample_taxid": [ "797541" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "1.074 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 125.0, "max": 125.0 }, "completeness": 95.83, "contamination": 2.46, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3745109", "Number of Sequences": "237", "Longest Sequences (bp)": "118095", "N50 (bp)": "25788", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.1", "Number of CDSs": "3110", "Average Protein Length": "329.7", "Coding Ratio (%)": "82.1", "Number of rRNAs": "0", "Number of tRNAs": "37", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mucilaginibacter ginsenosidivorans", "strain": "strain=Gsoil 3017", "accession": "GCA_007971025.1", "taxid": 398053, "species_taxid": 398053, "relation_to_type": "type", "validated": true, "ani": 77.8214, "matched_fragments": 340, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter mallensis", "strain": "strain=MP1X4", "accession": "GCA_900105165.1", "taxid": 652787, "species_taxid": 652787, "relation_to_type": "type", "validated": true, "ani": 76.9054, "matched_fragments": 164, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter terrigena", "strain": "strain=17JY9-4", "accession": "GCA_004168255.1", "taxid": 2492395, "species_taxid": 2492395, "relation_to_type": "type", "validated": true, "ani": 76.9037, "matched_fragments": 134, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter segetis", "strain": "strain=SD-g", "accession": "GCA_016522075.1", "taxid": 2793071, "species_taxid": 2793071, "relation_to_type": "type", "validated": true, "ani": 76.8776, "matched_fragments": 113, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter oryzae", "strain": "strain=DSM 19975", "accession": "GCA_003148845.1", "taxid": 468058, "species_taxid": 468058, "relation_to_type": "type", "validated": true, "ani": 76.7861, "matched_fragments": 154, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter inviolabilis", "strain": "strain=HC2", "accession": "GCA_011089895.1", "taxid": 2714892, "species_taxid": 2714892, "relation_to_type": "type", "validated": true, "ani": 76.755, "matched_fragments": 178, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter roseus", "strain": "strain=LMG 28454", "accession": "GCA_021215455.1", "taxid": 1528868, "species_taxid": 1528868, "relation_to_type": "type", "validated": true, "ani": 76.7498, "matched_fragments": 103, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pankratovii", "strain": "strain=ZT4R22", "accession": "GCA_014773265.1", "taxid": 2772110, "species_taxid": 2772110, "relation_to_type": "type", "validated": true, "ani": 76.7305, "matched_fragments": 150, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter frigoritolerans", "strain": "strain=ATCC BAA-1854", "accession": "GCA_007830615.1", "taxid": 652788, "species_taxid": 652788, "relation_to_type": "type", "validated": true, "ani": 76.7262, "matched_fragments": 173, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter phyllosphaerae", "strain": "strain=CCM 8625", "accession": "GCA_014635525.1", "taxid": 1812349, "species_taxid": 1812349, "relation_to_type": "type", "validated": true, "ani": 76.7105, "matched_fragments": 144, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter humi", "strain": "strain=S1162", "accession": "GCA_013087555.1", "taxid": 2732510, "species_taxid": 2732510, "relation_to_type": "type", "validated": true, "ani": 76.7046, "matched_fragments": 67, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gossypiicola", "strain": "strain=Gh-48", "accession": "GCA_900110105.1", "taxid": 551995, "species_taxid": 551995, "relation_to_type": "type", "validated": true, "ani": 76.6756, "matched_fragments": 170, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter glaciei", "strain": "strain=ZB1P21", "accession": "GCA_014773245.1", "taxid": 2772109, "species_taxid": 2772109, "relation_to_type": "type", "validated": true, "ani": 76.6746, "matched_fragments": 137, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter phyllosphaerae", "strain": "strain=PP-F2FG21", "accession": "GCA_004378255.1", "taxid": 1812349, "species_taxid": 1812349, "relation_to_type": "type", "validated": true, "ani": 76.6722, "matched_fragments": 143, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter phyllosphaerae", "strain": "strain=DSM 100995", "accession": "GCA_014196695.1", "taxid": 1812349, "species_taxid": 1812349, "relation_to_type": "type", "validated": true, "ani": 76.6699, "matched_fragments": 142, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter psychrotolerans", "strain": "strain=NH7-4", "accession": "GCA_004519315.1", "taxid": 1524096, "species_taxid": 1524096, "relation_to_type": "type", "validated": true, "ani": 76.6492, "matched_fragments": 145, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gilvus", "strain": "strain=F01003", "accession": "GCA_004054195.1", "taxid": 2305909, "species_taxid": 2305909, "relation_to_type": "type", "validated": true, "ani": 76.5812, "matched_fragments": 133, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pineti", "strain": "strain=47C3B", "accession": "GCA_900101875.1", "taxid": 1391627, "species_taxid": 1391627, "relation_to_type": "type", "validated": true, "ani": 76.5618, "matched_fragments": 155, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter conchicola", "strain": "strain=MYSH2", "accession": "GCA_003432115.1", "taxid": 2303333, "species_taxid": 2303333, "relation_to_type": "type", "validated": true, "ani": 76.5602, "matched_fragments": 126, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gotjawali", "strain": "strain=SA3-7", "accession": "GCA_002355435.1", "taxid": 1550579, "species_taxid": 1550579, "relation_to_type": "type", "validated": true, "ani": 76.5551, "matched_fragments": 191, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gotjawali", "strain": "strain=CECT 8628", "accession": "GCA_014191635.1", "taxid": 1550579, "species_taxid": 1550579, "relation_to_type": "type", "validated": true, "ani": 76.4776, "matched_fragments": 187, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 2.46, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_903866915.1", "gtdb_species": "s__Mucilaginibacter sp903866915", "ani": 100.0, "matched_fragments": 1118, "total_fragments": 1127, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.75", "min_intra_species_ani": "99.75", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_903863845.1", "gtdb_species": "s__Mucilaginibacter sp903863845", "ani": 87.3707, "matched_fragments": 925, "total_fragments": 1127, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.75", "min_intra_species_ani": "99.63", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_903887275.1", "gtdb_species": "s__Mucilaginibacter sp903887275", "ani": 82.9035, "matched_fragments": 715, "total_fragments": 1127, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007971025.1", "gtdb_species": "s__Mucilaginibacter ginsenosidivorans", "ani": 77.8016, "matched_fragments": 342, "total_fragments": 1127, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Sphingobacteriales", "f__Sphingobacteriaceae", "g__Mucilaginibacter", "s__Mucilaginibacter sp903866915" ], "_genome_taxon": [ "uncultured", "Mucilaginibacter", "sp.", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Sphingobacteriales", "f__Sphingobacteriaceae", "g__Mucilaginibacter", "s__Mucilaginibacter sp903866915", "Bacteria", "Bacteroidota", "Bacteroidia", "Sphingobacteriales", "Sphingobacteriaceae", "Mucilaginibacter", "Mucilaginibacter", "sp903866915" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }