{ "type": "genome", "identifier": "GCA_903867435.1", "organism": "uncultured Planctomycetota bacterium", "title": "uncultured Planctomycetota bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903867435.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6945648", "wgs_master": "CAIPRL000000000.1", "refseq_category": "na", "taxid": "120965", "species_taxid": "120965", "organism_name": "uncultured Planctomycetota bacterium", "infraspecific_name": "", "isolate": "LaPlata-5m-a_bin-501", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/19", "asm_name": "freshwater MAG --- LaPlata-5m-a_bin-501", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/867/435/GCA_903867435.1_freshwater_MAG_---_LaPlata-5m-a_bin-501", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-19", "dateModified": "2020-07-19", "datePublished": "2020-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Planctomycetota bacterium" ], "sample_taxid": [ "120965" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Puerto Rico" ], "sample_host_location_id": [], "data_size": "1.179 MB", "sample_ph_range": { "min": 823.0, "max": 823.0 }, "sample_temperature_range": { "min": 2976.0, "max": 2976.0 }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4329241", "Number of Sequences": "698", "Longest Sequences (bp)": "46135", "N50 (bp)": "9371", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.7", "Number of CDSs": "2897", "Average Protein Length": "357.6", "Coding Ratio (%)": "71.8", "Number of rRNAs": "0", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Tautonia plasticadhaerens", "strain": "strain=ElP", "accession": "GCA_007752535.1", "taxid": 2527974, "species_taxid": 2527974, "relation_to_type": "type", "validated": true, "ani": 75.165, "matched_fragments": 73, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paludisphaera soli", "strain": "strain=JC670", "accession": "GCA_011064595.1", "taxid": 2712865, "species_taxid": 2712865, "relation_to_type": "type", "validated": true, "ani": 75.1443, "matched_fragments": 90, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paludisphaera rhizosphaereae", "strain": "strain=JC665", "accession": "GCA_011065895.1", "taxid": 2711216, "species_taxid": 2711216, "relation_to_type": "type", "validated": true, "ani": 75.0634, "matched_fragments": 53, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrococcus terreus", "strain": "strain=CGMCC 1.6960", "accession": "GCA_014645235.1", "taxid": 574649, "species_taxid": 574649, "relation_to_type": "type", "validated": true, "ani": 74.9518, "matched_fragments": 130, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azohydromonas aeria", "strain": "strain=CFCC 13393", "accession": "GCA_009760915.1", "taxid": 2590212, "species_taxid": 2590212, "relation_to_type": "type", "validated": true, "ani": 74.9174, "matched_fragments": 108, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia hydrocarbonoxydans", "strain": "strain=NBRC 14498", "accession": "GCA_006539565.1", "taxid": 76726, "species_taxid": 76726, "relation_to_type": "type", "validated": true, "ani": 74.9125, "matched_fragments": 101, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella pollutisoli", "strain": "strain=KCTC 52677", "accession": "GCA_024609765.1", "taxid": 2250594, "species_taxid": 2250594, "relation_to_type": "type", "validated": true, "ani": 74.8921, "matched_fragments": 85, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia endophytica", "strain": "strain=DSM 44969", "accession": "GCA_004339565.1", "taxid": 401976, "species_taxid": 401976, "relation_to_type": "type", "validated": true, "ani": 74.8876, "matched_fragments": 114, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycisphaera mikurensis", "strain": "strain=NBRC 102666", "accession": "GCA_000284115.1", "taxid": 547188, "species_taxid": 547188, "relation_to_type": "type", "validated": true, "ani": 74.8754, "matched_fragments": 63, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus rhodnii", "strain": "strain=NBRC 100604", "accession": "GCA_001894925.1", "taxid": 38312, "species_taxid": 38312, "relation_to_type": "type", "validated": true, "ani": 74.866, "matched_fragments": 75, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycisphaera mikurensis", "strain": "strain=DSM 103959", "accession": "GCA_014207395.1", "taxid": 547188, "species_taxid": 547188, "relation_to_type": "type", "validated": true, "ani": 74.8624, "matched_fragments": 65, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus rhodnii", "strain": "strain=ATCC 35071", "accession": "GCA_008011915.1", "taxid": 38312, "species_taxid": 38312, "relation_to_type": "type", "validated": true, "ani": 74.8617, "matched_fragments": 76, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides antri", "strain": "strain=BN140041", "accession": "GCA_008373765.1", "taxid": 2607659, "species_taxid": 2607659, "relation_to_type": "type", "validated": true, "ani": 74.8587, "matched_fragments": 63, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsukamurella conjunctivitidis", "strain": "strain=HKU72", "accession": "GCA_007858475.1", "taxid": 2592068, "species_taxid": 2592068, "relation_to_type": "type", "validated": true, "ani": 74.8429, "matched_fragments": 65, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sporichthya polymorpha", "strain": "strain=DSM 43042", "accession": "GCA_000384115.1", "taxid": 35751, "species_taxid": 35751, "relation_to_type": "type", "validated": true, "ani": 74.8419, "matched_fragments": 79, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tistlia consotensis", "strain": "strain=DSM 21585", "accession": "GCA_900188055.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 74.8297, "matched_fragments": 117, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amaricoccus solimangrovi", "strain": "strain=HB172011", "accession": "GCA_006385685.1", "taxid": 2589815, "species_taxid": 2589815, "relation_to_type": "type", "validated": true, "ani": 74.7742, "matched_fragments": 89, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bosea robiniae", "strain": "strain=DSM 26672", "accession": "GCA_900102525.1", "taxid": 1036780, "species_taxid": 1036780, "relation_to_type": "type", "validated": true, "ani": 74.7487, "matched_fragments": 66, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes globisporus", "strain": "strain=DSM 43857", "accession": "GCA_000379645.1", "taxid": 113565, "species_taxid": 113565, "relation_to_type": "type", "validated": true, "ani": 74.7157, "matched_fragments": 108, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas alkaliterrae", "strain": "strain=DSM 25895", "accession": "GCA_014199195.1", "taxid": 1452450, "species_taxid": 1452450, "relation_to_type": "type", "validated": true, "ani": 74.7076, "matched_fragments": 103, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903928115.1", "gtdb_species": "s__F1-120-MAGs118 sp903928115", "ani": 99.8027, "matched_fragments": 1025, "total_fragments": 1079, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__UBA1135;o__UBA1135;f__GCA-002686595;g__F1-120-MAGs118", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.83", "min_intra_species_ani": "99.80", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_903892045.1", "gtdb_species": "s__F1-120-MAGs118 sp903892045", "ani": 84.3797, "matched_fragments": 776, "total_fragments": 1079, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__UBA1135;o__UBA1135;f__GCA-002686595;g__F1-120-MAGs118", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.41", "min_intra_species_ani": "99.41", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_016872795.1", "gtdb_species": "s__F1-120-MAGs118 sp016872795", "ani": 83.3605, "matched_fragments": 716, "total_fragments": 1079, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__UBA1135;o__UBA1135;f__GCA-002686595;g__F1-120-MAGs118", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016872715.1", "gtdb_species": "s__F1-120-MAGs118 sp016872715", "ani": 82.932, "matched_fragments": 737, "total_fragments": 1079, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__UBA1135;o__UBA1135;f__GCA-002686595;g__F1-120-MAGs118", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005778045.1", "gtdb_species": "s__F1-120-MAGs118 sp005778045", "ani": 82.61, "matched_fragments": 675, "total_fragments": 1079, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__UBA1135;o__UBA1135;f__GCA-002686595;g__F1-120-MAGs118", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013360535.1", "gtdb_species": "s__F1-120-MAGs118 sp013360535", "ani": 82.1119, "matched_fragments": 494, "total_fragments": 1079, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__UBA1135;o__UBA1135;f__GCA-002686595;g__F1-120-MAGs118", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011525785.1", "gtdb_species": "s__WYBT01 sp011525785", "ani": 79.008, "matched_fragments": 545, "total_fragments": 1079, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__UBA1135;o__UBA1135;f__GCA-002686595;g__WYBT01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016795325.1", "gtdb_species": "s__WYBT01 sp016795325", "ani": 78.981, "matched_fragments": 521, "total_fragments": 1079, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__UBA1135;o__UBA1135;f__GCA-002686595;g__WYBT01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Planctomycetota", "c__UBA1135", "o__UBA1135", "f__GCA-002686595", "g__F1-120-MAGs118", "s__F1-120-MAGs118 sp903928115" ], "_genome_taxon": [ "uncultured", "Planctomycetota", "bacterium", "d__Bacteria", "p__Planctomycetota", "c__UBA1135", "o__UBA1135", "f__GCA-002686595", "g__F1-120-MAGs118", "s__F1-120-MAGs118 sp903928115", "Bacteria", "Planctomycetota", "UBA1135", "UBA1135", "GCA-002686595", "F1-120-MAGs118", "F1-120-MAGs118", "sp903928115" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }